--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/Makefile Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS =
+SPHINXBUILD = sphinx-build
+SPHINXPROJ = elog2labfolder
+SOURCEDIR = .
+BUILDDIR = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+ @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+ @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
\ No newline at end of file
Binary file elog2labfolder/_build/doctrees/anderesKapitel.doctree has changed
Binary file elog2labfolder/_build/doctrees/environment.pickle has changed
Binary file elog2labfolder/_build/doctrees/example.doctree has changed
Binary file elog2labfolder/_build/doctrees/groups.doctree has changed
Binary file elog2labfolder/_build/doctrees/import_export.doctree has changed
Binary file elog2labfolder/_build/doctrees/importing_from_elog.doctree has changed
Binary file elog2labfolder/_build/doctrees/index.doctree has changed
Binary file elog2labfolder/_build/doctrees/installation.doctree has changed
Binary file elog2labfolder/_build/doctrees/labfolder.doctree has changed
Binary file elog2labfolder/_build/doctrees/weiteresUnterkapitel.doctree has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/Makefile Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,68 @@
+# Makefile for Sphinx LaTeX output
+
+ALLDOCS = $(basename $(wildcard *.tex))
+ALLPDF = $(addsuffix .pdf,$(ALLDOCS))
+ALLDVI = $(addsuffix .dvi,$(ALLDOCS))
+ALLXDV =
+ALLPS = $(addsuffix .ps,$(ALLDOCS))
+ALLIMGS = $(wildcard *.png *.gif *.jpg *.jpeg)
+
+# Prefix for archive names
+ARCHIVEPREFIX =
+# Additional LaTeX options (passed via variables in latexmkrc/latexmkjarc file)
+export LATEXOPTS =
+# Additional latexmk options
+LATEXMKOPTS =
+# format: pdf or dvi (used only by archive targets)
+FMT = pdf
+
+LATEX = latexmk -dvi
+PDFLATEX = latexmk -pdf -dvi- -ps-
+
+
+%.png %.gif %.jpg %.jpeg: FORCE_MAKE
+ extractbb '$@'
+
+%.dvi: %.tex FORCE_MAKE
+ $(LATEX) $(LATEXMKOPTS) '$<'
+
+%.ps: %.dvi
+ dvips '$<'
+
+%.pdf: %.tex FORCE_MAKE
+ $(PDFLATEX) $(LATEXMKOPTS) '$<'
+
+all: $(ALLPDF)
+
+all-dvi: $(ALLDVI)
+
+all-ps: $(ALLPS)
+
+all-pdf: $(ALLPDF)
+
+zip: all-$(FMT)
+ mkdir $(ARCHIVEPREFIX)docs-$(FMT)
+ cp $(ALLPDF) $(ARCHIVEPREFIX)docs-$(FMT)
+ zip -q -r -9 $(ARCHIVEPREFIX)docs-$(FMT).zip $(ARCHIVEPREFIX)docs-$(FMT)
+ rm -r $(ARCHIVEPREFIX)docs-$(FMT)
+
+tar: all-$(FMT)
+ mkdir $(ARCHIVEPREFIX)docs-$(FMT)
+ cp $(ALLPDF) $(ARCHIVEPREFIX)docs-$(FMT)
+ tar cf $(ARCHIVEPREFIX)docs-$(FMT).tar $(ARCHIVEPREFIX)docs-$(FMT)
+ rm -r $(ARCHIVEPREFIX)docs-$(FMT)
+
+gz: tar
+ gzip -9 < $(ARCHIVEPREFIX)docs-$(FMT).tar > $(ARCHIVEPREFIX)docs-$(FMT).tar.gz
+
+bz2: tar
+ bzip2 -9 -k $(ARCHIVEPREFIX)docs-$(FMT).tar
+
+xz: tar
+ xz -9 -k $(ARCHIVEPREFIX)docs-$(FMT).tar
+
+clean:
+ rm -f *.log *.ind *.aux *.toc *.syn *.idx *.out *.ilg *.pla *.ps *.tar *.tar.gz *.tar.bz2 *.tar.xz $(ALLPDF) $(ALLDVI) $(ALLXDV) *.fls *.fdb_latexmk
+
+.PHONY: all all-pdf all-dvi all-ps clean zip tar gz bz2 xz
+.PHONY: FORCE_MAKE
\ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/elog2labfolder.aux Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,54 @@
+\relax
+\providecommand\hyper@newdestlabel[2]{}
+\providecommand\HyperFirstAtBeginDocument{\AtBeginDocument}
+\HyperFirstAtBeginDocument{\ifx\hyper@anchor\@undefined
+\global\let\oldcontentsline\contentsline
+\gdef\contentsline#1#2#3#4{\oldcontentsline{#1}{#2}{#3}}
+\global\let\oldnewlabel\newlabel
+\gdef\newlabel#1#2{\newlabelxx{#1}#2}
+\gdef\newlabelxx#1#2#3#4#5#6{\oldnewlabel{#1}{{#2}{#3}}}
+\AtEndDocument{\ifx\hyper@anchor\@undefined
+\let\contentsline\oldcontentsline
+\let\newlabel\oldnewlabel
+\fi}
+\fi}
+\global\let\hyper@last\relax
+\gdef\HyperFirstAtBeginDocument#1{#1}
+\providecommand\HyField@AuxAddToFields[1]{}
+\providecommand\HyField@AuxAddToCoFields[2]{}
+\select@language{english}
+\@writefile{toc}{\select@language{english}}
+\@writefile{lof}{\select@language{english}}
+\@writefile{lot}{\select@language{english}}
+\newlabel{index::doc}{{}{1}{}{section*.2}{}}
+\@writefile{toc}{\contentsline {chapter}{\numberline {1}Installation of labfolder}{1}{chapter.1}}
+\@writefile{lof}{\addvspace {10\p@ }}
+\@writefile{lot}{\addvspace {10\p@ }}
+\newlabel{installation:welcome-to-elog2labfolder-s-documentation}{{1}{1}{Installation of labfolder}{chapter.1}{}}
+\newlabel{installation::doc}{{1}{1}{Installation of labfolder}{chapter.1}{}}
+\newlabel{installation:installation-of-labfolder}{{1}{1}{Installation of labfolder}{chapter.1}{}}
+\@writefile{toc}{\contentsline {chapter}{\numberline {2}Groups, ownership and sharing in labfolder}{5}{chapter.2}}
+\@writefile{lof}{\addvspace {10\p@ }}
+\@writefile{lot}{\addvspace {10\p@ }}
+\newlabel{groups:groups-ownership-and-sharing-in-labfolder}{{2}{5}{Groups, ownership and sharing in labfolder}{chapter.2}{}}
+\newlabel{groups::doc}{{2}{5}{Groups, ownership and sharing in labfolder}{chapter.2}{}}
+\@writefile{toc}{\contentsline {section}{\numberline {2.1}Private projects}{5}{section.2.1}}
+\newlabel{groups:private-projects}{{2.1}{5}{Private projects}{section.2.1}{}}
+\@writefile{toc}{\contentsline {section}{\numberline {2.2}Group projects}{5}{section.2.2}}
+\newlabel{groups:group-projects}{{2.2}{5}{Group projects}{section.2.2}{}}
+\@writefile{toc}{\contentsline {section}{\numberline {2.3}Group settings}{6}{section.2.3}}
+\newlabel{groups:group-settings}{{2.3}{6}{Group settings}{section.2.3}{}}
+\@writefile{toc}{\contentsline {chapter}{\numberline {3}Import and export of projects and entries}{7}{chapter.3}}
+\@writefile{lof}{\addvspace {10\p@ }}
+\@writefile{lot}{\addvspace {10\p@ }}
+\newlabel{import_export::doc}{{3}{7}{Import and export of projects and entries}{chapter.3}{}}
+\newlabel{import_export:import-and-export-of-projects-and-entries}{{3}{7}{Import and export of projects and entries}{chapter.3}{}}
+\@writefile{toc}{\contentsline {section}{\numberline {3.1}Import}{7}{section.3.1}}
+\newlabel{import_export:import}{{3.1}{7}{Import}{section.3.1}{}}
+\@writefile{toc}{\contentsline {section}{\numberline {3.2}Export}{7}{section.3.2}}
+\newlabel{import_export:export}{{3.2}{7}{Export}{section.3.2}{}}
+\@writefile{toc}{\contentsline {chapter}{\numberline {4}Importing projects from e.g. the ELOGbook to Labfolder at the FHI}{9}{chapter.4}}
+\@writefile{lof}{\addvspace {10\p@ }}
+\@writefile{lot}{\addvspace {10\p@ }}
+\newlabel{importing_from_elog:importing-projects-from-e-g-the-elogbook-to-labfolder-at-the-fhi}{{4}{9}{Importing projects from e.g. the ELOGbook to Labfolder at the FHI}{chapter.4}{}}
+\newlabel{importing_from_elog::doc}{{4}{9}{Importing projects from e.g. the ELOGbook to Labfolder at the FHI}{chapter.4}{}}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/elog2labfolder.fdb_latexmk Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,171 @@
+# Fdb version 3
+["makeindex elog2labfolder.idx"] 1515425753 "elog2labfolder.idx" "elog2labfolder.ind" "elog2labfolder" 1515668281
+ "elog2labfolder.idx" 1515668281 0 d41d8cd98f00b204e9800998ecf8427e ""
+ (generated)
+ "elog2labfolder.ilg"
+ "elog2labfolder.ind"
+["pdflatex"] 1515668280 "elog2labfolder.tex" "elog2labfolder.pdf" "elog2labfolder" 1515668281
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+
+% Include hyperref last.
+\usepackage{hyperref}
+% Fix anchor placement for figures with captions.
+\usepackage{hypcap}% it must be loaded after hyperref.
+% Set up styles of URL: it should be placed after hyperref.
+\urlstyle{same}
+\addto\captionsenglish{\renewcommand{\contentsname}{Contents:}}
+
+\addto\captionsenglish{\renewcommand{\figurename}{Fig.}}
+\addto\captionsenglish{\renewcommand{\tablename}{Table}}
+\addto\captionsenglish{\renewcommand{\literalblockname}{Listing}}
+
+\addto\captionsenglish{\renewcommand{\literalblockcontinuedname}{continued from previous page}}
+\addto\captionsenglish{\renewcommand{\literalblockcontinuesname}{continues on next page}}
+
+\addto\extrasenglish{\def\pageautorefname{page}}
+
+\setcounter{tocdepth}{1}
+
+
+
+\title{Labfolder at FHI Documentation}
+\date{Jan 11, 2018}
+\release{1.0}
+\author{Stefan Weiher}
+\newcommand{\sphinxlogo}{\vbox{}}
+\renewcommand{\releasename}{Release}
+\makeindex
+
+\begin{document}
+
+\maketitle
+\sphinxtableofcontents
+\phantomsection\label{\detokenize{index::doc}}
+
+
+
+\chapter{Installation of labfolder}
+\label{\detokenize{installation:welcome-to-elog2labfolder-s-documentation}}\label{\detokenize{installation::doc}}\label{\detokenize{installation:installation-of-labfolder}}
+Labfolder is easy to install. Follow the instructions given in the \sphinxstyleemphasis{labfolder Installation Manual}. The broad steps are: \sphinxstylestrong{install MySQL, docker and labolder; configure labfolder via the server.cnf file}. This labfolder config file could look like this:
+
+\fvset{hllines={, ,}}%
+\begin{sphinxVerbatim}[commandchars=\\\{\}]
+\PYGZsh{} Network settings
+DEFAULT\PYGZus{}HTTP\PYGZus{}PROTOCOL=https://
+DEFAULT\PYGZus{}DOMAIN=labfolder.rz\PYGZhy{}berlin.mpg.de
+
+\PYGZsh{} JDBC Properties
+JDBC\PYGZus{}SERVER\PYGZus{}TIMEZONE=Europe/Berlin
+JDBC\PYGZus{}DATABASE\PYGZus{}URL=jdbc:mysql://localhost:3306/labfolder?useUnicode=true\PYGZam{}characterEncoding=UTF\PYGZhy{}8
+JDBC\PYGZus{}USERNAME=labfolder
+JDBC\PYGZus{}PASSWORD=fhilab
+JDBC\PYGZus{}SCHEMA\PYGZus{}NAME=labfolder
+\PYGZsh{}REMOVE\PYGZus{}ABANDONED\PYGZus{}TIMEOUT=60
+
+\PYGZsh{} Mail client properties
+MAIL\PYGZus{}STARTTLS=false
+MAIL\PYGZus{}AUTHENTICATION\PYGZus{}ENABLE=false
+MAIL\PYGZus{}HOST=mail.fhi\PYGZhy{}berlin.mpg.de
+MAIL\PYGZus{}PORT=25
+\PYGZsh{}MAIL\PYGZus{}USERNAME=
+\PYGZsh{}MAIL\PYGZus{}PASSWORD=
+MAIL\PYGZus{}EMAIL=ppb@fhi\PYGZhy{}berlin.mpg.de
+
+\PYGZsh{} Server Event logging
+LOG\PYGZus{}TO\PYGZus{}FILE=true
+
+\PYGZsh{}Maximum upload file size
+FILEUPLOAD\PYGZus{}MAXUPLOADSIZE=25000000
+
+\PYGZsh{} User and group control
+DEFAULT\PYGZus{}GROUP\PYGZus{}SIZE=50
+DEFAULT\PYGZus{}GROUP\PYGZus{}TYPE\PYGZus{}MAXI=true
+DEFAULT\PYGZus{}USER\PYGZus{}STORAGE=3221225472
+FEATURE\PYGZus{}GLOBAL\PYGZus{}PREVENT\PYGZus{}DELETE\PYGZus{}CONTENT=false
+
+\PYGZsh{} Terms and Privacy links
+TERMS\PYGZus{}OF\PYGZus{}USE\PYGZus{}LINK=https://www.labfolder.com/terms\PYGZhy{}external\PYGZhy{}servers/
+PRIVACY\PYGZus{}LINK=https://www.labfolder.com/privacy\PYGZhy{}external\PYGZhy{}servers/
+
+\PYGZsh{} LDAP Authentication
+FEATURE\PYGZus{}LDAP\PYGZus{}AUTHENTICATION=true
+LDAP\PYGZus{}URL=ldap://ldap.rz\PYGZhy{}berlin.mpg.de:389
+LDAP\PYGZus{}BASE=ou=people,dc=ppb,dc=rz\PYGZhy{}berlin,dc=mpg,dc=de
+\PYGZsh{}LDAP\PYGZus{}SERVER\PYGZus{}TYPE=
+LDAP\PYGZus{}USER\PYGZus{}DN=cn=pwCheck,dc=rz\PYGZhy{}berlin,dc=mpg,dc=de
+LDAP\PYGZus{}PASSWORD=ProstetnikVogonJeltz
+\PYGZsh{}LDAP\PYGZus{}ANONYMOUS\PYGZus{}READ\PYGZus{}ONLY=
+LDAP\PYGZus{}USER\PYGZus{}DN\PYGZus{}PATTERNS=uid=\PYGZob{}0\PYGZcb{}
+\PYGZsh{}LDAP\PYGZus{}IS\PYGZus{}TLS\PYGZus{}ENABLED=
+\PYGZsh{}LDAP\PYGZus{}IS\PYGZus{}ATTRIBUTE\PYGZus{}SEARCH\PYGZus{}ENABLED=
+\PYGZsh{}LDAP\PYGZus{}ATTRIBUTE\PYGZus{}SEARCH\PYGZus{}NAME=
+
+\PYGZsh{} Usage monitoring
+ACTIVE\PYGZus{}USER\PYGZus{}REPORT\PYGZus{}USE\PYGZus{}DEFAULT\PYGZus{}MAIL\PYGZus{}CLIENT=true
+CUSTOMER\PYGZus{}IDENTIFIER=\PYGZsq{}Fritz\PYGZhy{}Haber\PYGZhy{}Institut\PYGZsq{}
+
+\PYGZsh{} Mendeley
+FEATURE\PYGZus{}MENDELEY=false
+\PYGZsh{}MENDELEY\PYGZus{}CLIENT\PYGZus{}ID=
+\PYGZsh{}MENDELEY\PYGZus{}CLIENT\PYGZus{}SECRET=
+\PYGZsh{}MENDELEY\PYGZus{}CLIENT\PYGZus{}CALLBACKURL=http://localhost:9091/eln/mendeley/oauthCallback
+
+\PYGZsh{} Dropbox
+FEATURE\PYGZus{}DROPBOX=false
+\PYGZsh{}DROPBOX\PYGZus{}CONSUMER\PYGZus{}KEY=
+\PYGZsh{}DROPBOX\PYGZus{}CONSUMER\PYGZus{}SECRET=
+
+\PYGZsh{} Figshare
+FEATURE\PYGZus{}FIGSHARE=false
+
+\PYGZsh{} XHTML Export
+FEATURE\PYGZus{}XHTML\PYGZus{}EXPORT=true
+EXPORT\PYGZus{}DOCUMENT\PYGZus{}REPOSITORY\PYGZus{}TYPE=fileSystem
+\end{sphinxVerbatim}
+
+The configuration is explained in detail in the installation manual. Now, \sphinxstylestrong{create the labfolder database and run labfolder} (see the manual for details). Additionally, you could install Apache and set it up as a reverse proxy in order to make labfolder only available through https. The exact steps are:
+
+\fvset{hllines={, ,}}%
+\begin{sphinxVerbatim}[commandchars=\\\{\}]
+labfolder@lf:\PYGZti{}\PYGZdl{} sudo apt\PYGZhy{}get install build\PYGZhy{}essential
+labfolder@lf:\PYGZti{}\PYGZdl{} sudo apt install apache2
+labfolder@lf:\PYGZti{}\PYGZdl{} sudo a2enmod proxy proxy\PYGZus{}ajp proxy\PYGZus{}http rewrite deflate headers proxy\PYGZus{}balancer proxy\PYGZus{}connect proxy\PYGZus{}html xml2enc
+labfolder@lf:\PYGZti{}\PYGZdl{} sudo a2enmod ssl
+
+\PYGZsh{}\PYGZsh{}\PYGZsh{} Use certificates from e.g. let\PYGZsq{}s encrypt. Please see below for more information.
+
+\PYGZsh{}\PYGZsh{}\PYGZsh{} create /etc/apache2/sites\PYGZhy{}available/labfolder.conf with virtual hosts for http and https:
+labfolder@lf:\PYGZti{}\PYGZdl{} sudo a2ensite labfolder.conf
+labfolder@lf:\PYGZti{}\PYGZdl{} sudo a2dissite 000\PYGZhy{}default.conf
+labfolder@lf:\PYGZti{}\PYGZdl{} sudo service apache2 restart
+\end{sphinxVerbatim}
+
+To get SSL certificates from letsencrypt is quite straight forward. For example this guide shows how to set up SSL certificates:
+
+\sphinxurl{https://www.digitalocean.com/community/tutorials/how-to-secure-apache-with-let-s-encrypt-on-ubuntu-16-04}
+
+The Apache labfolder config file could look like this:
+
+\fvset{hllines={, ,}}%
+\begin{sphinxVerbatim}[commandchars=\\\{\}]
+\PYG{o}{\PYGZlt{}}\PYG{n}{VirtualHost} \PYG{o}{*}\PYG{p}{:}\PYG{l+m+mi}{80}\PYG{o}{\PYGZgt{}}
+ \PYG{n}{ErrorLog} \PYG{o}{/}\PYG{n}{var}\PYG{o}{/}\PYG{n}{log}\PYG{o}{/}\PYG{n}{apache2}\PYG{o}{/}\PYG{n}{error}\PYG{o}{.}\PYG{n}{log}
+ \PYG{n}{LogLevel} \PYG{n}{warn}
+
+ \PYG{n}{ServerName} \PYG{n}{labfolder}\PYG{o}{.}\PYG{n}{rz}\PYG{o}{\PYGZhy{}}\PYG{n}{berlin}\PYG{o}{.}\PYG{n}{mpg}\PYG{o}{.}\PYG{n}{de}
+ \PYG{n}{Redirect} \PYG{o}{/} \PYG{n}{https}\PYG{p}{:}\PYG{o}{/}\PYG{o}{/}\PYG{n}{labfolder}\PYG{o}{.}\PYG{n}{rz}\PYG{o}{\PYGZhy{}}\PYG{n}{berlin}\PYG{o}{.}\PYG{n}{mpg}\PYG{o}{.}\PYG{n}{de}\PYG{o}{/}
+\PYG{o}{\PYGZlt{}}\PYG{o}{/}\PYG{n}{VirtualHost}\PYG{o}{\PYGZgt{}}
+
+\PYG{o}{\PYGZlt{}}\PYG{n}{VirtualHost} \PYG{o}{*}\PYG{p}{:}\PYG{l+m+mi}{443}\PYG{o}{\PYGZgt{}}
+ \PYG{n}{ErrorLog} \PYG{o}{/}\PYG{n}{var}\PYG{o}{/}\PYG{n}{log}\PYG{o}{/}\PYG{n}{apache2}\PYG{o}{/}\PYG{n}{error}\PYG{o}{.}\PYG{n}{log}
+ \PYG{n}{LogLevel} \PYG{n}{warn}
+
+ \PYG{n}{ServerName} \PYG{n}{labfolder}\PYG{o}{.}\PYG{n}{rz}\PYG{o}{\PYGZhy{}}\PYG{n}{berlin}\PYG{o}{.}\PYG{n}{mpg}\PYG{o}{.}\PYG{n}{de}
+
+ \PYG{n}{SSLEngine} \PYG{n}{On}
+ \PYG{n}{SSLCertificateFile} \PYG{o}{/}\PYG{n}{etc}\PYG{o}{/}\PYG{n}{letsencrypt}\PYG{o}{/}\PYG{n}{live}\PYG{o}{/}\PYG{n}{labfolder}\PYG{o}{.}\PYG{n}{rz}\PYG{o}{\PYGZhy{}}\PYG{n}{berlin}\PYG{o}{.}\PYG{n}{mpg}\PYG{o}{.}\PYG{n}{de}\PYG{o}{/}\PYG{n}{fullchain}\PYG{o}{.}\PYG{n}{pem}
+ \PYG{n}{SSLCertificateKeyFile} \PYG{o}{/}\PYG{n}{etc}\PYG{o}{/}\PYG{n}{letsencrypt}\PYG{o}{/}\PYG{n}{live}\PYG{o}{/}\PYG{n}{labfolder}\PYG{o}{.}\PYG{n}{rz}\PYG{o}{\PYGZhy{}}\PYG{n}{berlin}\PYG{o}{.}\PYG{n}{mpg}\PYG{o}{.}\PYG{n}{de}\PYG{o}{/}\PYG{n}{privkey}\PYG{o}{.}\PYG{n}{pem}
+
+ \PYG{n}{ProxyPass} \PYG{o}{/} \PYG{n}{http}\PYG{p}{:}\PYG{o}{/}\PYG{o}{/}\PYG{l+m+mf}{141.14}\PYG{o}{.}\PYG{l+m+mf}{138.230}\PYG{p}{:}\PYG{l+m+mi}{9091}\PYG{o}{/}
+ \PYG{n}{ProxyPassReverse} \PYG{o}{/} \PYG{n}{http}\PYG{p}{:}\PYG{o}{/}\PYG{o}{/}\PYG{l+m+mf}{141.14}\PYG{o}{.}\PYG{l+m+mf}{138.230}\PYG{p}{:}\PYG{l+m+mi}{9091}\PYG{o}{/}
+\PYG{o}{\PYGZlt{}}\PYG{o}{/}\PYG{n}{VirtualHost}\PYG{o}{\PYGZgt{}}
+\end{sphinxVerbatim}
+
+
+\chapter{Groups, ownership and sharing in labfolder}
+\label{\detokenize{groups:groups-ownership-and-sharing-in-labfolder}}\label{\detokenize{groups::doc}}
+As labfolder user you can create groups (ultimately: group projects) and private projects. In \sphinxstyleemphasis{Manage \textgreater{} Projects} you see all projects that you own and that you are a member of.
+
+
+\section{Private projects}
+\label{\detokenize{groups:private-projects}}
+You alone are the owner of these projects in \sphinxstyleemphasis{My Private Projects}. Their ownership cannot be transfered from you to anyone else via the webinterface. Only via directly manipulating the database the ownership can be changed to an active user.
+
+\noindent{\hspace*{\fill}\sphinxincludegraphics[width=0.700\linewidth]{{private_projects}.png}\hspace*{\fill}}
+
+
+\section{Group projects}
+\label{\detokenize{groups:group-projects}}
+Any labfolder user can create groups and subgroups in \sphinxstyleemphasis{Manage \textgreater{} Groups \textgreater{} Button “+Add”}. Within (sub)groups you can create group projects of which you are the administrator (admin). In the role of the admin you can do the following:
+\begin{itemize}
+\item {}
+invite users to your (sub)group via e-mail
+
+\item {}
+move users between subgroups
+
+\item {}
+set and remove (sub)group members as admins
+
+\item {}
+remove users from a (sub)group e.g. when they are leaving the institute (\sphinxstylestrong{In this case the ownership of this user’s projects within the (sub)group needs to be transfered first!})
+
+\item {}
+delete (sub)groups (before deleting it you need to remove all group members)
+
+\end{itemize}
+
+
+\section{Group settings}
+\label{\detokenize{groups:group-settings}}
+Administrators of groups (but not the ones of the subgroups) can edit the general settings of groups.
+
+\noindent{\hspace*{\fill}\sphinxincludegraphics[width=0.700\linewidth]{{group_settings}.png}\hspace*{\fill}}
+\begin{itemize}
+\item {}
+Through the option \sphinxstyleemphasis{Prevent group members from deleting content} all users (including the admin) are prevented from deleting projects or any other data from the labfolder database. Projects will merely be hidden if a user decides to \sphinxstyleemphasis{Remove} it from their list of projects.
+
+\item {}
+By checking the option \sphinxstyleemphasis{Prevent group members from having private projects}, group members will not be allowed to have private projects. All private projects of group members will be moved into the group projects, but will not be shared with any other group members.
+
+\item {}
+By switching on \sphinxstyleemphasis{Users can be members of several subgroups}, users which are already members of a group can be invited again to another subgroup within the group. If switched to off members cannot be invited to subgroups of their current group.
+
+\end{itemize}
+
+
+\chapter{Import and export of projects and entries}
+\label{\detokenize{import_export::doc}}\label{\detokenize{import_export:import-and-export-of-projects-and-entries}}
+
+\section{Import}
+\label{\detokenize{import_export:import}}
+The import of projects (from another labfolder instance or from another logbook software) is only possible via the labfolder API. An import of labfolder-own projects via webinterface is not possible to date. You can find the API documentation here:
+
+\begin{DUlineblock}{0em}
+\item[] Version 1: \sphinxurl{http://labfolder.rz-berlin.mpg.de:9091/api/v1}
+\item[] Version 2: \sphinxurl{https://labfolder.rz-berlin.mpg.de/api/v2/docs/development.html}
+\end{DUlineblock}
+
+Version 2 is still in the development phase.
+
+
+\section{Export}
+\label{\detokenize{import_export:export}}
+Exporting projects (or just single entries) is possible in three different formats: PDF, XHTML and JSON. The export as PDF can be done from within a project …
+
+\noindent{\hspace*{\fill}\sphinxincludegraphics[width=0.700\linewidth]{{export_of_projects}.png}\hspace*{\fill}}
+
+… or from the project overview (\sphinxstyleemphasis{Manage \textgreater{} Projects}):
+
+\noindent{\hspace*{\fill}\sphinxincludegraphics[width=0.700\linewidth]{{export_of_projects2}.png}\hspace*{\fill}}
+
+The XHTML export can be done via the settings:
+
+\noindent{\hspace*{\fill}\sphinxincludegraphics[width=0.700\linewidth]{{export_xhtml}.png}\hspace*{\fill}}
+
+However, to use this type of export it has to be installed first in the \sphinxstyleemphasis{Manage \textgreater{} Apps} section. By means of the XHTML export all projects that one owns will be exported. A detailled selection of projects or entries to be exported is not possible. As soon as the export process is finished a download link appears in the settings in \sphinxstyleemphasis{Data exports}. The downloadable ZIP file contains all images and files along with an index.html file that contains information about all entries. You could open and view the index.html file in a browser similar to the view in labfolder.
+
+The JSON export is only useable via the API endpoint \sphinxcode{GET /entries}. However, at the moment the response only contains useful information such as dates and tags. The author name is hidden behind the author ID and the entry text content is completely missing.
+
+
+\chapter{Importing projects from e.g. the ELOGbook to Labfolder at the FHI}
+\label{\detokenize{importing_from_elog:importing-projects-from-e-g-the-elogbook-to-labfolder-at-the-fhi}}\label{\detokenize{importing_from_elog::doc}}
+The ELOG entries of a certain project need to be exported as \sphinxstyleemphasis{Raw} which looks like this:
+
+\fvset{hllines={, ,}}%
+\begin{sphinxVerbatim}[commandchars=\\\{\}]
+\PYGZdl{}@MID@\PYGZdl{}: 12
+Date: Tue, 03 Dec 2013 12:15:14 +0100
+Author: Wieland SchÃ\P{}llkopf
+Author Email: mailto:wschoell@fhi\PYGZhy{}berlin.mpg.de
+Category: Shift summary
+Subject: 1st solid\PYGZhy{}state experiment with FHI FEL
+Severity: DOCU
+Keywords:
+Record date: 1386069171
+Attachment:
+Encoding: HTML
+========================================
+\PYGZlt{}p\PYGZgt{}Today Alex Paarmann and Marc Herzog are measuring in the wavelength range from 10 to 20 micron with a 0.5 mm thick GGG (Gadolinium Gallium Garnet, \PYGZlt{}a title=\PYGZdq{}Gadolinium\PYGZdq{} href=\PYGZdq{}http://en.wikipedia.org/wiki/Gadolinium\PYGZdq{}\PYGZgt{}Gd\PYGZlt{}/a\PYGZgt{}\PYGZlt{}sub\PYGZgt{}3\PYGZlt{}/sub\PYGZgt{}\PYGZlt{}a title=\PYGZdq{}Gallium\PYGZdq{} href=\PYGZdq{}http://en.wikipedia.org/wiki/Gallium\PYGZdq{}\PYGZgt{}Ga\PYGZlt{}/a\PYGZgt{}\PYGZlt{}sub\PYGZgt{}5\PYGZlt{}/sub\PYGZgt{}\PYGZlt{}a title=\PYGZdq{}Oxygen\PYGZdq{} href=\PYGZdq{}http://en.wikipedia.org/wiki/Oxygen\PYGZdq{}\PYGZgt{}O\PYGZlt{}/a\PYGZgt{}\PYGZlt{}sub\PYGZgt{}12\PYGZlt{}/sub\PYGZgt{}). Electron energy is set to 26 MeV.\PYGZlt{}/p\PYGZgt{}
+\end{sphinxVerbatim}
+
+This ASCII export looks like this in the ELOG webinterface:
+
+\noindent{\hspace*{\fill}\sphinxincludegraphics[width=1.000\linewidth]{{elog_entry}.png}\hspace*{\fill}}
+
+What is noticeable is that the ELOG export comes with a “Ã\P{}” instead of an “ö”. Interestingly, if only entries done by Wieland are exported the export file has UTF-8 encoding which can actually print German “Umlaute” (ö, ä, ü). If all entries are exported the encoding changes to an encoding that cannot handle e.g. “ö”.
+
+After importing the above ELOG entry into labfolder this entry appears like that:
+
+\noindent{\hspace*{\fill}\sphinxincludegraphics[width=1.000\linewidth]{{entry_after_import}.png}\hspace*{\fill}}
+
+
+
+\renewcommand{\indexname}{Index}
+\printindex
+\end{document}
\ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/elog2labfolder.toc Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,10 @@
+\select@language {english}
+\contentsline {chapter}{\numberline {1}Installation of labfolder}{1}{chapter.1}
+\contentsline {chapter}{\numberline {2}Groups, ownership and sharing in labfolder}{5}{chapter.2}
+\contentsline {section}{\numberline {2.1}Private projects}{5}{section.2.1}
+\contentsline {section}{\numberline {2.2}Group projects}{5}{section.2.2}
+\contentsline {section}{\numberline {2.3}Group settings}{6}{section.2.3}
+\contentsline {chapter}{\numberline {3}Import and export of projects and entries}{7}{chapter.3}
+\contentsline {section}{\numberline {3.1}Import}{7}{section.3.1}
+\contentsline {section}{\numberline {3.2}Export}{7}{section.3.2}
+\contentsline {chapter}{\numberline {4}Importing projects from e.g. the ELOGbook to Labfolder at the FHI}{9}{chapter.4}
Binary file elog2labfolder/_build/latex/elog_entry.png has changed
Binary file elog2labfolder/_build/latex/entry_after_import.png has changed
Binary file elog2labfolder/_build/latex/export_of_projects.png has changed
Binary file elog2labfolder/_build/latex/export_of_projects2.png has changed
Binary file elog2labfolder/_build/latex/export_xhtml.png has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/footnotehyper-sphinx.sty Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,268 @@
+\NeedsTeXFormat{LaTeX2e}
+\ProvidesPackage{footnotehyper-sphinx}%
+ [2017/03/07 v1.6 hyperref aware footnote.sty for sphinx (JFB)]
+%%
+%% Package: footnotehyper-sphinx
+%% Version: based on footnotehyper.sty 2017/03/07 v1.0
+%% as available at http://www.ctan.org/pkg/footnotehyper
+%% License: the one applying to Sphinx
+%%
+%% Refer to the PDF documentation at http://www.ctan.org/pkg/footnotehyper for
+%% the code comments.
+%%
+%% Differences:
+%% 1. a partial tabulary compatibility layer added (enough for Sphinx mark-up),
+%% 2. use of \spx@opt@BeforeFootnote from sphinx.sty,
+%% 3. use of \sphinxunactivateextrasandspace from sphinx.sty,
+%% 4. macro definition \sphinxfootnotemark,
+%% 5. macro definition \sphinxlongtablepatch
+\DeclareOption*{\PackageWarning{footnotehyper-sphinx}{Option `\CurrentOption' is unknown}}%
+\ProcessOptions\relax
+\newbox\FNH@notes
+\newdimen\FNH@width
+\let\FNH@colwidth\columnwidth
+\newif\ifFNH@savingnotes
+\AtBeginDocument {%
+ \let\FNH@latex@footnote \footnote
+ \let\FNH@latex@footnotetext\footnotetext
+ \let\FNH@H@@footnotetext \@footnotetext
+ \newenvironment{savenotes}
+ {\FNH@savenotes\ignorespaces}{\FNH@spewnotes\ignorespacesafterend}%
+ \let\spewnotes \FNH@spewnotes
+ \let\footnote \FNH@footnote
+ \let\footnotetext \FNH@footnotetext
+ \let\endfootnote \FNH@endfntext
+ \let\endfootnotetext\FNH@endfntext
+ \@ifpackageloaded{hyperref}
+ {\ifHy@hyperfootnotes
+ \let\FNH@H@@footnotetext\H@@footnotetext
+ \else
+ \let\FNH@hyper@fntext\FNH@nohyp@fntext
+ \fi}%
+ {\let\FNH@hyper@fntext\FNH@nohyp@fntext}%
+}%
+\def\FNH@hyper@fntext{\FNH@fntext\FNH@hyper@fntext@i}%
+\def\FNH@nohyp@fntext{\FNH@fntext\FNH@nohyp@fntext@i}%
+\def\FNH@fntext #1{%
+ \ifx\ifmeasuring@\@undefined
+ \expandafter\@secondoftwo\else\expandafter\@firstofone\fi
+% these two lines modified for Sphinx (tabulary compatibility):
+ {\ifmeasuring@\expandafter\@gobbletwo\else\expandafter\@firstofone\fi}%
+ {\ifx\equation$\expandafter\@gobbletwo\fi #1}%$
+}%
+\long\def\FNH@hyper@fntext@i#1{%
+ \global\setbox\FNH@notes\vbox
+ {\unvbox\FNH@notes
+ \FNH@startnote
+ \@makefntext
+ {\rule\z@\footnotesep\ignorespaces
+ \ifHy@nesting\expandafter\ltx@firstoftwo
+ \else\expandafter\ltx@secondoftwo
+ \fi
+ {\expandafter\hyper@@anchor\expandafter{\Hy@footnote@currentHref}{#1}}%
+ {\Hy@raisedlink
+ {\expandafter\hyper@@anchor\expandafter{\Hy@footnote@currentHref}%
+ {\relax}}%
+ \let\@currentHref\Hy@footnote@currentHref
+ \let\@currentlabelname\@empty
+ #1}%
+ \@finalstrut\strutbox
+ }%
+ \FNH@endnote
+ }%
+}%
+\long\def\FNH@nohyp@fntext@i#1{%
+ \global\setbox\FNH@notes\vbox
+ {\unvbox\FNH@notes
+ \FNH@startnote
+ \@makefntext{\rule\z@\footnotesep\ignorespaces#1\@finalstrut\strutbox}%
+ \FNH@endnote
+ }%
+}%
+\def\FNH@startnote{%
+ \hsize\FNH@colwidth
+ \interlinepenalty\interfootnotelinepenalty
+ \reset@font\footnotesize
+ \floatingpenalty\@MM
+ \@parboxrestore
+ \protected@edef\@currentlabel{\csname p@\@mpfn\endcsname\@thefnmark}%
+ \color@begingroup
+}%
+\def\FNH@endnote{\color@endgroup}%
+\def\FNH@savenotes{%
+ \begingroup
+ \ifFNH@savingnotes\else
+ \FNH@savingnotestrue
+ \let\@footnotetext \FNH@hyper@fntext
+ \let\@mpfootnotetext \FNH@hyper@fntext
+ \let\H@@mpfootnotetext\FNH@nohyp@fntext
+ \FNH@width\columnwidth
+ \let\FNH@colwidth\FNH@width
+ \global\setbox\FNH@notes\box\voidb@x
+ \let\FNH@thempfn\thempfn
+ \let\FNH@mpfn\@mpfn
+ \ifx\@minipagerestore\relax\let\@minipagerestore\@empty\fi
+ \expandafter\def\expandafter\@minipagerestore\expandafter{%
+ \@minipagerestore
+ \let\thempfn\FNH@thempfn
+ \let\@mpfn\FNH@mpfn
+ }%
+ \fi
+}%
+\def\FNH@spewnotes {%
+ \endgroup
+ \ifFNH@savingnotes\else
+ \ifvoid\FNH@notes\else
+ \begingroup
+ \let\@makefntext\@empty
+ \let\@finalstrut\@gobble
+ \let\rule\@gobbletwo
+ \FNH@H@@footnotetext{\unvbox\FNH@notes}%
+ \endgroup
+ \fi
+ \fi
+}%
+\def\FNH@footnote@envname {footnote}%
+\def\FNH@footnotetext@envname{footnotetext}%
+\def\FNH@footnote{%
+% this line added for Sphinx:
+ \spx@opt@BeforeFootnote
+ \ifx\@currenvir\FNH@footnote@envname
+ \expandafter\FNH@footnoteenv
+ \else
+ \expandafter\FNH@latex@footnote
+ \fi
+}%
+\def\FNH@footnoteenv{%
+% this line added for Sphinx (footnotes in parsed literal blocks):
+ \catcode13=5 \sphinxunactivateextrasandspace
+ \@ifnextchar[%
+ \FNH@footnoteenv@i %]
+ {\stepcounter\@mpfn
+ \protected@xdef\@thefnmark{\thempfn}%
+ \@footnotemark
+ \def\FNH@endfntext@fntext{\@footnotetext}%
+ \FNH@startfntext}%
+}%
+\def\FNH@footnoteenv@i[#1]{%
+ \begingroup
+ \csname c@\@mpfn\endcsname #1\relax
+ \unrestored@protected@xdef\@thefnmark{\thempfn}%
+ \endgroup
+ \@footnotemark
+ \def\FNH@endfntext@fntext{\@footnotetext}%
+ \FNH@startfntext
+}%
+\def\FNH@footnotetext{%
+ \ifx\@currenvir\FNH@footnotetext@envname
+ \expandafter\FNH@footnotetextenv
+ \else
+ \expandafter\FNH@latex@footnotetext
+ \fi
+}%
+\def\FNH@footnotetextenv{%
+ \@ifnextchar[%
+ \FNH@footnotetextenv@i %]
+ {\protected@xdef\@thefnmark{\thempfn}%
+ \def\FNH@endfntext@fntext{\@footnotetext}%
+ \FNH@startfntext}%
+}%
+\def\FNH@footnotetextenv@i[#1]{%
+ \begingroup
+ \csname c@\@mpfn\endcsname #1\relax
+ \unrestored@protected@xdef\@thefnmark{\thempfn}%
+ \endgroup
+ \ifFNH@savingnotes
+ \def\FNH@endfntext@fntext{\FNH@nohyp@fntext}%
+ \else
+ \def\FNH@endfntext@fntext{\FNH@H@@footnotetext}%
+ \fi
+ \FNH@startfntext
+}%
+\def\FNH@startfntext{%
+ \setbox\z@\vbox\bgroup
+ \FNH@startnote
+ \FNH@prefntext
+ \rule\z@\footnotesep\ignorespaces
+}%
+\def\FNH@endfntext {%
+ \@finalstrut\strutbox
+ \FNH@postfntext
+ \FNH@endnote
+ \egroup
+ \begingroup
+ \let\@makefntext\@empty\let\@finalstrut\@gobble\let\rule\@gobbletwo
+ \FNH@endfntext@fntext {\unvbox\z@}%
+ \endgroup
+}%
+\AtBeginDocument{%
+ \let\FNH@@makefntext\@makefntext
+ \ifx\@makefntextFB\undefined
+ \expandafter\@gobble\else\expandafter\@firstofone\fi
+ {\ifFBFrenchFootnotes \let\FNH@@makefntext\@makefntextFB \else
+ \let\FNH@@makefntext\@makefntextORI\fi}%
+ \expandafter\FNH@check@a\FNH@@makefntext{1.2!3?4,}%
+ \FNH@@@1.2!3?4,\FNH@@@\relax
+}%
+\long\def\FNH@check@a #11.2!3?4,#2\FNH@@@#3{%
+ \ifx\relax#3\expandafter\@firstoftwo\else\expandafter\@secondoftwo\fi
+ \FNH@bad@makefntext@alert
+ {\def\FNH@prefntext{#1}\def\FNH@postfntext{#2}\FNH@check@b}%
+}%
+\def\FNH@check@b #1\relax{%
+ \expandafter\expandafter\expandafter\FNH@check@c
+ \expandafter\meaning\expandafter\FNH@prefntext
+ \meaning\FNH@postfntext1.2!3?4,\FNH@check@c\relax
+}%
+\def\FNH@check@c #11.2!3?4,#2#3\relax{%
+ \ifx\FNH@check@c#2\expandafter\@gobble\fi\FNH@bad@makefntext@alert
+}%
+% slight reformulation for Sphinx
+\def\FNH@bad@makefntext@alert{%
+ \PackageWarningNoLine{footnotehyper-sphinx}%
+ {Footnotes will be sub-optimal, sorry. This is due to the document class or^^J
+ some package modifying macro \string\@makefntext.^^J
+ You can try to report this incompatibility at^^J
+ https://github.com/sphinx-doc/sphinx with this info:}%
+ \typeout{\meaning\@makefntext}%
+ \let\FNH@prefntext\@empty\let\FNH@postfntext\@empty
+}%
+% this macro from original footnote.sty is not used anymore by Sphinx
+% but for simplicity sake let's just keep it as is
+\def\makesavenoteenv{\@ifnextchar[\FNH@msne@ii\FNH@msne@i}%]
+\def\FNH@msne@i #1{%
+ \expandafter\let\csname FNH$#1\expandafter\endcsname %$
+ \csname #1\endcsname
+ \expandafter\let\csname endFNH$#1\expandafter\endcsname %$
+ \csname end#1\endcsname
+ \FNH@msne@ii[#1]{FNH$#1}%$
+}%
+\def\FNH@msne@ii[#1]#2{%
+ \expandafter\edef\csname#1\endcsname{%
+ \noexpand\savenotes
+ \expandafter\noexpand\csname#2\endcsname
+ }%
+ \expandafter\edef\csname end#1\endcsname{%
+ \expandafter\noexpand\csname end#2\endcsname
+ \noexpand\expandafter
+ \noexpand\spewnotes
+ \noexpand\if@endpe\noexpand\@endpetrue\noexpand\fi
+ }%
+}%
+% end of footnotehyper 2017/02/16 v0.99
+% some extras for Sphinx :
+% \sphinxfootnotemark: usable in section titles and silently removed from TOCs.
+\def\sphinxfootnotemark [#1]%
+ {\ifx\thepage\relax\else\protect\spx@opt@BeforeFootnote
+ \protect\footnotemark[#1]\fi}%
+\AtBeginDocument{%
+ % let hyperref less complain
+ \pdfstringdefDisableCommands{\def\sphinxfootnotemark [#1]{}}%
+ % to obtain hyperlinked footnotes in longtable environment we must replace
+ % hyperref's patch of longtable's patch of \@footnotetext by our own
+ \let\LT@p@ftntext\FNH@hyper@fntext
+ % this *requires* longtable to be used always wrapped in savenotes environment
+}%
+\endinput
+%%
+%% End of file `footnotehyper-sphinx.sty'.
Binary file elog2labfolder/_build/latex/group_settings.png has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/latexmkjarc Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,7 @@
+$latex = 'platex ' . $ENV{'LATEXOPTS'} . ' -kanji=utf8 %O %S';
+$dvipdf = 'dvipdfmx %O -o %D %S';
+$makeindex = 'rm -f %D; mendex -U -f -d %B.dic -s python.ist %S || echo "mendex exited with error code $? (ignoring)" && : >> %D';
+add_cus_dep( "glo", "gls", 0, "makeglo" );
+sub makeglo {
+ return system( "mendex -J -f -s gglo.ist -o '$_[0].gls' '$_[0].glo'" );
+}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/latexmkrc Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,9 @@
+$latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S';
+$pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S';
+$lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S';
+$xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S';
+$makeindex = 'makeindex -s python.ist %O -o %D %S';
+add_cus_dep( "glo", "gls", 0, "makeglo" );
+sub makeglo {
+ return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" );
+}
\ No newline at end of file
Binary file elog2labfolder/_build/latex/private_projects.png has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/python.ist Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,13 @@
+line_max 100
+headings_flag 1
+heading_prefix " \\bigletter "
+
+preamble "\\begin{sphinxtheindex}
+\\def\\bigletter#1{{\\Large\\sffamily#1}\\nopagebreak\\vspace{1mm}}
+
+"
+
+postamble "\n\n\\end{sphinxtheindex}\n"
+
+symhead_positive "{Symbols}"
+numhead_positive "{Numbers}"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/sphinx.sty Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,1556 @@
+%
+% sphinx.sty
+%
+% Adapted from the old python.sty, mostly written by Fred Drake,
+% by Georg Brandl.
+%
+
+\NeedsTeXFormat{LaTeX2e}[1995/12/01]
+\ProvidesPackage{sphinx}[2017/12/12 v1.6.6 LaTeX package (Sphinx markup)]
+
+% provides \ltx@ifundefined
+% (many packages load ltxcmds: graphicx does for pdftex and lualatex but
+% not xelatex, and anyhow kvoptions does, but it may be needed in future to
+% use \sphinxdeprecationwarning earlier, and it needs \ltx@ifundefined)
+\RequirePackage{ltxcmds}
+
+%% for deprecation warnings
+\newcommand\sphinxdeprecationwarning[4]{% #1 the deprecated macro or name,
+% #2 = when deprecated, #3 = when removed, #4 = additional info
+ \edef\spx@tempa{\detokenize{#1}}%
+ \ltx@ifundefined{sphinx_depr_\spx@tempa}{%
+ \global\expandafter\let\csname sphinx_depr_\spx@tempa\endcsname\spx@tempa
+ \expandafter\AtEndDocument\expandafter{\expandafter\let\expandafter
+ \sphinxdeprecatedmacro\csname sphinx_depr_\spx@tempa\endcsname
+ \PackageWarningNoLine{sphinx}{^^J**** SPHINX DEPRECATION WARNING:^^J
+ \sphinxdeprecatedmacro^^J
+ \@spaces- is deprecated at Sphinx #2^^J
+ \@spaces- and removed at Sphinx #3.^^J
+ #4^^J****}}%
+ }{% warning already emitted (at end of latex log), don't repeat
+ }}
+
+
+%% PACKAGES
+%
+% we delay handling of options to after having loaded packages, because
+% of the need to use \definecolor.
+\RequirePackage{graphicx}
+\@ifclassloaded{memoir}{}{\RequirePackage{fancyhdr}}
+% for \text macro and \iffirstchoice@ conditional even if amsmath not loaded
+\RequirePackage{amstext}
+\RequirePackage[warn]{textcomp}
+\RequirePackage{titlesec}
+\@ifpackagelater{titlesec}{2016/03/15}%
+ {\@ifpackagelater{titlesec}{2016/03/21}%
+ {}%
+ {\newif\ifsphinx@ttlpatch@ok
+ \IfFileExists{etoolbox.sty}{%
+ \RequirePackage{etoolbox}%
+ \patchcmd{\ttlh@hang}{\parindent\z@}{\parindent\z@\leavevmode}%
+ {\sphinx@ttlpatch@oktrue}{}%
+ \ifsphinx@ttlpatch@ok
+ \patchcmd{\ttlh@hang}{\noindent}{}{}{\sphinx@ttlpatch@okfalse}%
+ \fi
+ }{}%
+ \ifsphinx@ttlpatch@ok
+ \typeout{^^J Package Sphinx Info: ^^J
+ **** titlesec 2.10.1 successfully patched for bugfix ****^^J}%
+ \else
+ \AtEndDocument{\PackageWarningNoLine{sphinx}{^^J%
+******** titlesec 2.10.1 has a bug, (section numbers disappear) ......|^^J%
+******** and Sphinx could not patch it, perhaps because your local ...|^^J%
+******** copy is already fixed without a changed release date. .......|^^J%
+******** If not, you must update titlesec! ...........................|}}%
+ \fi
+ }%
+ }{}
+\RequirePackage{tabulary}
+% tabulary has a bug with its re-definition of \multicolumn in its first pass
+% which is not \long. But now Sphinx does not use LaTeX's \multicolumn but its
+% own macro. Hence we don't even need to patch tabulary. See sphinxmulticell.sty
+% X or S (Sphinx) may have meanings if some table package is loaded hence
+% \X was chosen to avoid possibility of conflict
+\newcolumntype{\X}[2]{p{\dimexpr
+ (\linewidth-\arrayrulewidth)*#1/#2-\tw@\tabcolsep-\arrayrulewidth\relax}}
+\newcolumntype{\Y}[1]{p{\dimexpr
+ #1\dimexpr\linewidth-\arrayrulewidth\relax-\tw@\tabcolsep-\arrayrulewidth\relax}}
+% using here T (for Tabulary) feels less of a problem than the X could be
+\newcolumntype{T}{J}%
+% For tables allowing pagebreaks
+\RequirePackage{longtable}
+% User interface to set-up whitespace before and after tables:
+\newcommand*\sphinxtablepre {0pt}%
+\newcommand*\sphinxtablepost{\medskipamount}%
+\newcommand*\sphinxbelowcaptionspace{.5\sphinxbaselineskip}%
+% as one can not use \baselineskip from inside longtable (it is zero there)
+% we need \sphinxbaselineskip, which defaults to \baselineskip
+\def\sphinxbaselineskip{\baselineskip}%
+% These commands are inserted by the table templates
+\def\sphinxatlongtablestart
+ {\par
+ \vskip\parskip
+ \vskip\dimexpr\sphinxtablepre\relax % adjust vertical position
+ \vbox{}% get correct baseline from above
+ \LTpre\z@skip\LTpost\z@skip % set to zero longtable's own skips
+ \edef\sphinxbaselineskip{\dimexpr\the\dimexpr\baselineskip\relax\relax}%
+ }%
+\def\sphinxatlongtableend{\prevdepth\z@\vskip\sphinxtablepost\relax}%
+\def\sphinxlongtablecapskipadjust
+ {\dimexpr-\dp\strutbox-\sphinxbaselineskip+\sphinxbelowcaptionspace\relax}%
+% Now for tables not using longtable
+\def\sphinxattablestart
+ {\par
+ \vskip\dimexpr\sphinxtablepre\relax
+ }%
+\let\sphinxattableend\sphinxatlongtableend
+% longtable's wraps captions to a maximal width of \LTcapwidth
+% so we do the same for all tables
+\newcommand*\sphinxcapstartof[1]{%
+ \vskip\parskip
+ \vbox{}% force baselineskip for good positioning by capstart of hyperanchor
+ \def\@captype{#1}%
+ \capstart
+% move back vertically to compensate space inserted by next paragraph
+ \vskip-\baselineskip\vskip-\parskip
+}%
+\newcommand\sphinxcaption[2][\LTcapwidth]{%
+ \noindent\hb@xt@\linewidth{\hss
+ \vtop{\@tempdima\dimexpr#1\relax
+% don't exceed linewidth for the caption width
+ \ifdim\@tempdima>\linewidth\hsize\linewidth\else\hsize\@tempdima\fi
+% longtable ignores \abovecaptionskip/\belowcaptionskip, so do the same here
+ \abovecaptionskip\z@skip
+ \belowcaptionskip\z@skip
+ \caption[{#2}]%
+ {\strut\ignorespaces#2\ifhmode\unskip\@finalstrut\strutbox\fi}%
+ }\hss}%
+ \par\prevdepth\dp\strutbox
+}%
+\newcommand\sphinxaftercaption
+{% this default definition serves with a caption *above* a table, to make sure
+ % its last baseline is \sphinxbelowcaptionspace above table top
+ \nobreak
+ \vskip\dimexpr\sphinxbelowcaptionspace\relax
+ \vskip-\baselineskip\vskip-\parskip
+}%
+% varwidth is crucial for our handling of general contents in merged cells
+\RequirePackage{varwidth}
+% but addition of a compatibility patch with hyperref is needed
+% (tested with varwidth v 0.92 Mar 2009)
+\AtBeginDocument {%
+ \let\@@vwid@Hy@raisedlink\Hy@raisedlink
+ \long\def\@vwid@Hy@raisedlink#1{\@vwid@wrap{\@@vwid@Hy@raisedlink{#1}}}%
+ \edef\@vwid@setup{%
+ \let\noexpand\Hy@raisedlink\noexpand\@vwid@Hy@raisedlink % HYPERREF !
+ \unexpanded\expandafter{\@vwid@setup}}%
+}%
+% Homemade package to handle merged cells
+\RequirePackage{sphinxmulticell}
+\RequirePackage{makeidx}
+% For framing code-blocks and warning type notices, and shadowing topics
+\RequirePackage{framed}
+% The xcolor package draws better fcolorboxes around verbatim code
+\IfFileExists{xcolor.sty}{
+ \RequirePackage{xcolor}
+}{
+ \RequirePackage{color}
+}
+% For highlighted code.
+\RequirePackage{fancyvrb}
+\fvset{fontsize=\small}
+\define@key{FV}{hllines}{\def\sphinx@verbatim@checkifhl##1{\in@{, ##1,}{#1}}}
+% For hyperlinked footnotes in tables; also for gathering footnotes from
+% topic and warning blocks. Also to allow code-blocks in footnotes.
+\RequirePackage{footnotehyper-sphinx}
+% For the H specifier. Do not \restylefloat{figure}, it breaks Sphinx code
+% for allowing figures in tables.
+\RequirePackage{float}
+% For floating figures in the text. Better to load after float.
+\RequirePackage{wrapfig}
+% Separate paragraphs by space by default.
+\RequirePackage{parskip}
+% For parsed-literal blocks.
+\RequirePackage{alltt}
+% Display "real" single quotes in literal blocks.
+\RequirePackage{upquote}
+% control caption around literal-block
+\RequirePackage{capt-of}
+\RequirePackage{needspace}
+
+% to make pdf with correct encoded bookmarks in Japanese
+% this should precede the hyperref package
+\ifx\kanjiskip\undefined
+% for non-Japanese: make sure bookmarks are ok also with lualatex
+ \PassOptionsToPackage{pdfencoding=unicode}{hyperref}
+\else
+ \RequirePackage{atbegshi}
+ \ifx\ucs\undefined
+ \ifnum 42146=\euc"A4A2
+ \AtBeginShipoutFirst{\special{pdf:tounicode EUC-UCS2}}
+ \else
+ \AtBeginShipoutFirst{\special{pdf:tounicode 90ms-RKSJ-UCS2}}
+ \fi
+ \else
+ \AtBeginShipoutFirst{\special{pdf:tounicode UTF8-UCS2}}
+ \fi
+\fi
+
+\ifx\@jsc@uplatextrue\undefined\else
+ \PassOptionsToPackage{setpagesize=false}{hyperref}
+\fi
+
+% These options can be overriden inside 'hyperref' key
+% or by later use of \hypersetup.
+\PassOptionsToPackage{colorlinks,breaklinks,%
+ linkcolor=InnerLinkColor,filecolor=OuterLinkColor,%
+ menucolor=OuterLinkColor,urlcolor=OuterLinkColor,%
+ citecolor=InnerLinkColor}{hyperref}
+
+% stylesheet for highlighting with pygments
+\RequirePackage{sphinxhighlight}
+% fix baseline increase from Pygments latex formatter in case of error tokens
+% and keep \fboxsep's scope local via added braces
+\def\PYG@tok@err{%
+ \def\PYG@bc##1{{\setlength{\fboxsep}{-\fboxrule}%
+ \fcolorbox[rgb]{1.00,0.00,0.00}{1,1,1}{\strut ##1}}}%
+}
+\def\PYG@tok@cs{%
+ \def\PYG@tc##1{\textcolor[rgb]{0.25,0.50,0.56}{##1}}%
+ \def\PYG@bc##1{{\setlength{\fboxsep}{0pt}%
+ \colorbox[rgb]{1.00,0.94,0.94}{\strut ##1}}}%
+}%
+
+
+%% OPTIONS
+%
+% Handle options via "kvoptions" (later loaded by hyperref anyhow)
+\RequirePackage{kvoptions}
+\SetupKeyvalOptions{prefix=spx@opt@} % use \spx@opt@ prefix
+
+% Sphinx legacy text layout: 1in margins on all four sides
+\ifx\@jsc@uplatextrue\undefined
+\DeclareStringOption[1in]{hmargin}
+\DeclareStringOption[1in]{vmargin}
+\DeclareStringOption[.5in]{marginpar}
+\else
+% Japanese standard document classes handle \mag in a special way
+\DeclareStringOption[\inv@mag in]{hmargin}
+\DeclareStringOption[\inv@mag in]{vmargin}
+\DeclareStringOption[.5\dimexpr\inv@mag in\relax]{marginpar}
+\fi
+
+\DeclareBoolOption{dontkeepoldnames} % \ifspx@opt@dontkeepoldnames = \iffalse
+\DeclareStringOption[0]{maxlistdepth}% \newcommand*\spx@opt@maxlistdepth{0}
+
+% dimensions, we declare the \dimen registers here.
+\newdimen\sphinxverbatimsep
+\newdimen\sphinxverbatimborder
+\newdimen\sphinxshadowsep
+\newdimen\sphinxshadowsize
+\newdimen\sphinxshadowrule
+% \DeclareStringOption is not convenient for the handling of these dimensions
+% because we want to assign the values to the corresponding registers. Even if
+% we added the code to the key handler it would be too late for the initial
+% set-up and we would need to do initial assignments explicitely. We end up
+% using \define@key directly.
+% verbatim
+\sphinxverbatimsep=\fboxsep
+ \define@key{sphinx}{verbatimsep}{\sphinxverbatimsep\dimexpr #1\relax}
+\sphinxverbatimborder=\fboxrule
+ \define@key{sphinx}{verbatimborder}{\sphinxverbatimborder\dimexpr #1\relax}
+% topic boxes
+\sphinxshadowsep =5pt
+ \define@key{sphinx}{shadowsep}{\sphinxshadowsep\dimexpr #1\relax}
+\sphinxshadowsize=4pt
+ \define@key{sphinx}{shadowsize}{\sphinxshadowsize\dimexpr #1\relax}
+\sphinxshadowrule=\fboxrule
+ \define@key{sphinx}{shadowrule}{\sphinxshadowrule\dimexpr #1\relax}
+% verbatim
+\DeclareBoolOption[true]{verbatimwithframe}
+\DeclareBoolOption[true]{verbatimwrapslines}
+\DeclareBoolOption[false]{verbatimhintsturnover}
+\DeclareBoolOption[true]{inlineliteralwraps}
+% parsed literal
+\DeclareBoolOption[true]{parsedliteralwraps}
+% \textvisiblespace for compatibility with fontspec+XeTeX/LuaTeX
+\DeclareStringOption[\textcolor{red}{\textvisiblespace}]{verbatimvisiblespace}
+\DeclareStringOption % must use braces to hide the brackets
+ [{\makebox[2\fontcharwd\font`\x][r]{\textcolor{red}{\tiny$\m@th\hookrightarrow$}}}]%
+ {verbatimcontinued}
+% notices/admonitions
+% the dimensions for notices/admonitions are kept as macros and assigned to
+% \spx@notice@border at time of use, hence \DeclareStringOption is ok for this
+\newdimen\spx@notice@border
+\DeclareStringOption[0.5pt]{noteborder}
+\DeclareStringOption[0.5pt]{hintborder}
+\DeclareStringOption[0.5pt]{importantborder}
+\DeclareStringOption[0.5pt]{tipborder}
+\DeclareStringOption[1pt]{warningborder}
+\DeclareStringOption[1pt]{cautionborder}
+\DeclareStringOption[1pt]{attentionborder}
+\DeclareStringOption[1pt]{dangerborder}
+\DeclareStringOption[1pt]{errorborder}
+% footnotes
+\DeclareStringOption[\mbox{ }]{AtStartFootnote}
+% we need a public macro name for direct use in latex file
+\newcommand*{\sphinxAtStartFootnote}{\spx@opt@AtStartFootnote}
+% no such need for this one, as it is used inside other macros
+\DeclareStringOption[\leavevmode\unskip]{BeforeFootnote}
+% some font styling.
+\DeclareStringOption[\sffamily\bfseries]{HeaderFamily}
+% colours
+% same problems as for dimensions: we want the key handler to use \definecolor.
+% first, some colours with no prefix, for backwards compatibility
+\newcommand*{\sphinxDeclareColorOption}[2]{%
+ \definecolor{#1}#2%
+ \define@key{sphinx}{#1}{\definecolor{#1}##1}%
+}%
+\sphinxDeclareColorOption{TitleColor}{{rgb}{0.126,0.263,0.361}}
+\sphinxDeclareColorOption{InnerLinkColor}{{rgb}{0.208,0.374,0.486}}
+\sphinxDeclareColorOption{OuterLinkColor}{{rgb}{0.216,0.439,0.388}}
+\sphinxDeclareColorOption{VerbatimColor}{{rgb}{1,1,1}}
+\sphinxDeclareColorOption{VerbatimBorderColor}{{rgb}{0,0,0}}
+% now the colours defined with "sphinx" prefix in their names
+\newcommand*{\sphinxDeclareSphinxColorOption}[2]{%
+ % set the initial default
+ \definecolor{sphinx#1}#2%
+ % set the key handler. The "value" ##1 must be acceptable by \definecolor.
+ \define@key{sphinx}{#1}{\definecolor{sphinx#1}##1}%
+}%
+% Default color chosen to be as in minted.sty LaTeX package!
+\sphinxDeclareSphinxColorOption{VerbatimHighlightColor}{{rgb}{0.878,1,1}}
+% admonition boxes, "light" style
+\sphinxDeclareSphinxColorOption{noteBorderColor}{{rgb}{0,0,0}}
+\sphinxDeclareSphinxColorOption{hintBorderColor}{{rgb}{0,0,0}}
+\sphinxDeclareSphinxColorOption{importantBorderColor}{{rgb}{0,0,0}}
+\sphinxDeclareSphinxColorOption{tipBorderColor}{{rgb}{0,0,0}}
+% admonition boxes, "heavy" style
+\sphinxDeclareSphinxColorOption{warningBorderColor}{{rgb}{0,0,0}}
+\sphinxDeclareSphinxColorOption{cautionBorderColor}{{rgb}{0,0,0}}
+\sphinxDeclareSphinxColorOption{attentionBorderColor}{{rgb}{0,0,0}}
+\sphinxDeclareSphinxColorOption{dangerBorderColor}{{rgb}{0,0,0}}
+\sphinxDeclareSphinxColorOption{errorBorderColor}{{rgb}{0,0,0}}
+\sphinxDeclareSphinxColorOption{warningBgColor}{{rgb}{1,1,1}}
+\sphinxDeclareSphinxColorOption{cautionBgColor}{{rgb}{1,1,1}}
+\sphinxDeclareSphinxColorOption{attentionBgColor}{{rgb}{1,1,1}}
+\sphinxDeclareSphinxColorOption{dangerBgColor}{{rgb}{1,1,1}}
+\sphinxDeclareSphinxColorOption{errorBgColor}{{rgb}{1,1,1}}
+
+\DeclareDefaultOption{\@unknownoptionerror}
+\ProcessKeyvalOptions*
+% don't allow use of maxlistdepth via \sphinxsetup.
+\DisableKeyvalOption{sphinx}{maxlistdepth}
+% user interface: options can be changed midway in a document!
+\newcommand\sphinxsetup[1]{\setkeys{sphinx}{#1}}
+
+
+%% MAXLISTDEPTH
+%
+% remove LaTeX's cap on nesting depth if 'maxlistdepth' key used.
+% This is a hack, which works with the standard classes: it assumes \@toodeep
+% is always used in "true" branches: "\if ... \@toodeep \else .. \fi."
+
+% will force use the "false" branch (if there is one)
+\def\spx@toodeep@hack{\fi\iffalse}
+
+% do nothing if 'maxlistdepth' key not used or if package enumitem loaded.
+\ifnum\spx@opt@maxlistdepth=\z@\expandafter\@gobbletwo\fi
+\AtBeginDocument{%
+\@ifpackageloaded{enumitem}{\remove@to@nnil}{}%
+ \let\spx@toodeepORI\@toodeep
+ \def\@toodeep{%
+ \ifnum\@listdepth<\spx@opt@maxlistdepth\relax
+ \expandafter\spx@toodeep@hack
+ \else
+ \expandafter\spx@toodeepORI
+ \fi}%
+% define all missing \@list... macros
+ \count@\@ne
+ \loop
+ \ltx@ifundefined{@list\romannumeral\the\count@}
+ {\iffalse}{\iftrue\advance\count@\@ne}%
+ \repeat
+ \loop
+ \ifnum\count@>\spx@opt@maxlistdepth\relax\else
+ \expandafter\let
+ \csname @list\romannumeral\the\count@\expandafter\endcsname
+ \csname @list\romannumeral\the\numexpr\count@-\@ne\endcsname
+ % workaround 2.6--3.2d babel-french issue (fixed in 3.2e; no change needed)
+ \ltx@ifundefined{leftmargin\romannumeral\the\count@}
+ {\expandafter\let
+ \csname leftmargin\romannumeral\the\count@\expandafter\endcsname
+ \csname leftmargin\romannumeral\the\numexpr\count@-\@ne\endcsname}{}%
+ \advance\count@\@ne
+ \repeat
+% define all missing enum... counters and \labelenum... macros and \p@enum..
+ \count@\@ne
+ \loop
+ \ltx@ifundefined{c@enum\romannumeral\the\count@}
+ {\iffalse}{\iftrue\advance\count@\@ne}%
+ \repeat
+ \loop
+ \ifnum\count@>\spx@opt@maxlistdepth\relax\else
+ \newcounter{enum\romannumeral\the\count@}%
+ \expandafter\def
+ \csname labelenum\romannumeral\the\count@\expandafter\endcsname
+ \expandafter
+ {\csname theenum\romannumeral\the\numexpr\count@\endcsname.}%
+ \expandafter\def
+ \csname p@enum\romannumeral\the\count@\expandafter\endcsname
+ \expandafter
+ {\csname p@enum\romannumeral\the\numexpr\count@-\@ne\expandafter
+ \endcsname\csname theenum\romannumeral\the\numexpr\count@-\@ne\endcsname.}%
+ \advance\count@\@ne
+ \repeat
+% define all missing labelitem... macros
+ \count@\@ne
+ \loop
+ \ltx@ifundefined{labelitem\romannumeral\the\count@}
+ {\iffalse}{\iftrue\advance\count@\@ne}%
+ \repeat
+ \loop
+ \ifnum\count@>\spx@opt@maxlistdepth\relax\else
+ \expandafter\let
+ \csname labelitem\romannumeral\the\count@\expandafter\endcsname
+ \csname labelitem\romannumeral\the\numexpr\count@-\@ne\endcsname
+ \advance\count@\@ne
+ \repeat
+ \PackageInfo{sphinx}{maximal list depth extended to \spx@opt@maxlistdepth}%
+\@gobble\@nnil
+}
+
+
+%% INDEX, BIBLIOGRAPHY, APPENDIX, TABLE OF CONTENTS
+%
+% fix the double index and bibliography on the table of contents
+% in jsclasses (Japanese standard document classes)
+\ifx\@jsc@uplatextrue\undefined\else
+ \renewenvironment{sphinxtheindex}
+ {\cleardoublepage\phantomsection
+ \begin{theindex}}
+ {\end{theindex}}
+
+ \renewenvironment{sphinxthebibliography}[1]
+ {\cleardoublepage% \phantomsection % not needed here since TeXLive 2010's hyperref
+ \begin{thebibliography}{1}}
+ {\end{thebibliography}}
+\fi
+
+% disable \@chappos in Appendix in pTeX
+\ifx\kanjiskip\undefined\else
+ \let\py@OldAppendix=\appendix
+ \renewcommand{\appendix}{
+ \py@OldAppendix
+ \gdef\@chappos{}
+ }
+\fi
+
+% make commands known to non-Sphinx document classes
+\providecommand*{\sphinxtableofcontents}{\tableofcontents}
+\ltx@ifundefined{sphinxthebibliography}
+ {\newenvironment
+ {sphinxthebibliography}{\begin{thebibliography}}{\end{thebibliography}}%
+ }
+ {}% else clause of ifundefined
+\ltx@ifundefined{sphinxtheindex}
+ {\newenvironment{sphinxtheindex}{\begin{theindex}}{\end{theindex}}}%
+ {}% else clause of ifundefined
+
+
+%% COLOR (general)
+%
+% FIXME: \normalcolor should probably be used in place of \py@NormalColor
+% elsewhere, and \py@NormalColor should never be defined. \normalcolor
+% switches to the colour from last \color call in preamble.
+\def\py@NormalColor{\color{black}}
+% FIXME: it is probably better to use \color{TitleColor}, as TitleColor
+% can be customized from 'sphinxsetup', and drop usage of \py@TitleColor
+\def\py@TitleColor{\color{TitleColor}}
+% FIXME: this line should be dropped, as "9" is default anyhow.
+\ifdefined\pdfcompresslevel\pdfcompresslevel = 9 \fi
+
+
+%% PAGE STYLING
+%
+% Style parameters and macros used by most documents here
+\raggedbottom
+\sloppy
+\hbadness = 5000 % don't print trivial gripes
+
+\pagestyle{empty} % start this way
+
+% Redefine the 'normal' header/footer style when using "fancyhdr" package:
+% Note: this presupposes "twoside". If "oneside" class option, there will be warnings.
+\ltx@ifundefined{fancyhf}{}{
+ % Use \pagestyle{normal} as the primary pagestyle for text.
+ \fancypagestyle{normal}{
+ \fancyhf{}
+% (for \py@HeaderFamily cf "TITLES")
+ \fancyfoot[LE,RO]{{\py@HeaderFamily\thepage}}
+ \fancyfoot[LO]{{\py@HeaderFamily\nouppercase{\rightmark}}}
+ \fancyfoot[RE]{{\py@HeaderFamily\nouppercase{\leftmark}}}
+ \fancyhead[LE,RO]{{\py@HeaderFamily \@title, \py@release}}
+ \renewcommand{\headrulewidth}{0.4pt}
+ \renewcommand{\footrulewidth}{0.4pt}
+ % define chaptermark with \@chappos when \@chappos is available for Japanese
+ \ltx@ifundefined{@chappos}{}
+ {\def\chaptermark##1{\markboth{\@chapapp\space\thechapter\space\@chappos\space ##1}{}}}
+ }
+ % Update the plain style so we get the page number & footer line,
+ % but not a chapter or section title. This is to keep the first
+ % page of a chapter and the blank page between chapters `clean.'
+ \fancypagestyle{plain}{
+ \fancyhf{}
+ \fancyfoot[LE,RO]{{\py@HeaderFamily\thepage}}
+ \renewcommand{\headrulewidth}{0pt}
+ \renewcommand{\footrulewidth}{0.4pt}
+ }
+}
+
+% geometry
+\ifx\kanjiskip\undefined
+ \PassOptionsToPackage{%
+ hmargin={\unexpanded{\spx@opt@hmargin}},%
+ vmargin={\unexpanded{\spx@opt@vmargin}},%
+ marginpar=\unexpanded{\spx@opt@marginpar}}
+ {geometry}
+\else
+ % set text width for Japanese documents to be integer multiple of 1zw
+ % and text height to be integer multiple of \baselineskip
+ % the execution is delayed to \sphinxsetup then geometry.sty
+ \normalsize\normalfont
+ \newcommand*\sphinxtextwidthja[1]{%
+ \if@twocolumn\tw@\fi
+ \dimexpr
+ \numexpr\dimexpr\paperwidth-\tw@\dimexpr#1\relax\relax/
+ \dimexpr\if@twocolumn\tw@\else\@ne\fi zw\relax
+ zw\relax}%
+ \newcommand*\sphinxmarginparwidthja[1]{%
+ \dimexpr\numexpr\dimexpr#1\relax/\dimexpr1zw\relax zw\relax}%
+ \newcommand*\sphinxtextlinesja[1]{%
+ \numexpr\@ne+\dimexpr\paperheight-\topskip-\tw@\dimexpr#1\relax\relax/
+ \baselineskip\relax}%
+ \ifx\@jsc@uplatextrue\undefined\else
+ % the way we found in order for the papersize special written by
+ % geometry in the dvi file to be correct in case of jsbook class
+ \ifnum\mag=\@m\else % do nothing special if nomag class option or 10pt
+ \PassOptionsToPackage{truedimen}{geometry}%
+ \fi
+ \fi
+ \PassOptionsToPackage{%
+ hmarginratio={1:1},%
+ textwidth=\unexpanded{\sphinxtextwidthja{\spx@opt@hmargin}},%
+ vmarginratio={1:1},%
+ lines=\unexpanded{\sphinxtextlinesja{\spx@opt@vmargin}},%
+ marginpar=\unexpanded{\sphinxmarginparwidthja{\spx@opt@marginpar}},%
+ footskip=2\baselineskip,%
+ }{geometry}%
+ \AtBeginDocument
+ {% update a dimension used by the jsclasses
+ \ifx\@jsc@uplatextrue\undefined\else\fullwidth\textwidth\fi
+ % for some reason, jreport normalizes all dimensions with \@settopoint
+ \@ifclassloaded{jreport}
+ {\@settopoint\textwidth\@settopoint\textheight\@settopoint\marginparwidth}
+ {}% <-- "false" clause of \@ifclassloaded
+ }%
+\fi
+
+% fix fncychap's bug which uses prematurely the \textwidth value
+\@ifpackagewith{fncychap}{Bjornstrup}
+ {\AtBeginDocument{\mylen\textwidth\advance\mylen-2\myhi}}%
+ {}% <-- "false" clause of \@ifpackagewith
+
+
+%% TITLES
+%
+% Since Sphinx 1.5, users should use HeaderFamily key to 'sphinxsetup' rather
+% than defining their own \py@HeaderFamily command (which is still possible).
+% Memo: \py@HeaderFamily is also used by \maketitle as defined in
+% sphinxmanual.cls/sphinxhowto.cls
+\newcommand{\py@HeaderFamily}{\spx@opt@HeaderFamily}
+
+% This sets up the fancy chapter headings that make the documents look
+% at least a little better than the usual LaTeX output.
+\@ifpackagewith{fncychap}{Bjarne}{
+ \ChNameVar {\raggedleft\normalsize \py@HeaderFamily}
+ \ChNumVar {\raggedleft\Large \py@HeaderFamily}
+ \ChTitleVar{\raggedleft\Large \py@HeaderFamily}
+ % This creates (numbered) chapter heads without the leading \vspace*{}:
+ \def\@makechapterhead#1{%
+ {\parindent \z@ \raggedright \normalfont
+ \ifnum \c@secnumdepth >\m@ne
+ \if@mainmatter
+ \DOCH
+ \fi
+ \fi
+ \interlinepenalty\@M
+ \if@mainmatter
+ \DOTI{#1}%
+ \else%
+ \DOTIS{#1}%
+ \fi
+ }}
+}{}% <-- "false" clause of \@ifpackagewith
+
+% Augment the sectioning commands used to get our own font family in place,
+% and reset some internal data items (\titleformat from titlesec package)
+\titleformat{\section}{\Large\py@HeaderFamily}%
+ {\py@TitleColor\thesection}{0.5em}{\py@TitleColor}{\py@NormalColor}
+\titleformat{\subsection}{\large\py@HeaderFamily}%
+ {\py@TitleColor\thesubsection}{0.5em}{\py@TitleColor}{\py@NormalColor}
+\titleformat{\subsubsection}{\py@HeaderFamily}%
+ {\py@TitleColor\thesubsubsection}{0.5em}{\py@TitleColor}{\py@NormalColor}
+% By default paragraphs (and subsubsections) will not be numbered because
+% sphinxmanual.cls and sphinxhowto.cls set secnumdepth to 2
+\titleformat{\paragraph}{\py@HeaderFamily}%
+ {\py@TitleColor\theparagraph}{0.5em}{\py@TitleColor}{\py@NormalColor}
+\titleformat{\subparagraph}{\py@HeaderFamily}%
+ {\py@TitleColor\thesubparagraph}{0.5em}{\py@TitleColor}{\py@NormalColor}
+
+
+%% GRAPHICS
+%
+% \sphinxincludegraphics defined to resize images larger than the line width,
+% except if height or width option present.
+%
+% If scale is present, rescale before fitting to line width. (since 1.5)
+\newbox\spx@image@box
+\newcommand*{\sphinxincludegraphics}[2][]{%
+ \in@{height}{#1}\ifin@\else\in@{width}{#1}\fi
+ \ifin@ % height or width present
+ \includegraphics[#1]{#2}%
+ \else % no height nor width (but #1 may be "scale=...")
+ \setbox\spx@image@box\hbox{\includegraphics[#1,draft]{#2}}%
+ \ifdim \wd\spx@image@box>\linewidth
+ \setbox\spx@image@box\box\voidb@x % clear memory
+ \includegraphics[#1,width=\linewidth]{#2}%
+ \else
+ \includegraphics[#1]{#2}%
+ \fi
+ \fi
+}
+
+
+%% FIGURE IN TABLE
+%
+\newenvironment{sphinxfigure-in-table}[1][\linewidth]{%
+ \def\@captype{figure}%
+ \sphinxsetvskipsforfigintablecaption
+ \begin{minipage}{#1}%
+}{\end{minipage}}
+% store original \caption macro for use with figures in longtable and tabulary
+\AtBeginDocument{\let\spx@originalcaption\caption}
+\newcommand*\sphinxfigcaption
+ {\ifx\equation$%$% this is trick to identify tabulary first pass
+ \firstchoice@false\else\firstchoice@true\fi
+ \spx@originalcaption }
+\newcommand*\sphinxsetvskipsforfigintablecaption
+ {\abovecaptionskip\smallskipamount
+ \belowcaptionskip\smallskipamount}
+
+%% FOOTNOTES
+%
+% Support large numbered footnotes in minipage
+% But now obsolete due to systematic use of \savenotes/\spewnotes
+% when minipages are in use in the various macro definitions next.
+\def\thempfootnote{\arabic{mpfootnote}}
+
+
+%% LITERAL BLOCKS
+%
+% Based on use of "fancyvrb.sty"'s Verbatim.
+% - with framing allowing page breaks ("framed.sty")
+% - with breaking of long lines (exploits Pygments mark-up),
+% - with possibly of a top caption, non-separable by pagebreak.
+% - and usable inside tables or footnotes ("footnotehyper-sphinx").
+
+% For extensions which use \OriginalVerbatim and compatibility with Sphinx <
+% 1.5, we define and use these when (unmodified) Verbatim will be needed. But
+% Sphinx >= 1.5 does not modify the \Verbatim macro anymore.
+\let\OriginalVerbatim \Verbatim
+\let\endOriginalVerbatim\endVerbatim
+
+% if the available space on page is less than \literalblockneedspace, insert pagebreak
+\newcommand{\sphinxliteralblockneedspace}{5\baselineskip}
+\newcommand{\sphinxliteralblockwithoutcaptionneedspace}{1.5\baselineskip}
+
+% for captions of literal blocks
+% also define `\theH...` macros for hyperref
+\newcounter{literalblock}
+\ltx@ifundefined{c@chapter}
+ {\@addtoreset{literalblock}{section}
+ \def\theliteralblock {\ifnum\c@section>\z@ \thesection.\fi\arabic{literalblock}}
+ \def\theHliteralblock {\theHsection.\arabic{literalblock}}}
+ {\@addtoreset{literalblock}{chapter}
+ \def\theliteralblock {\ifnum\c@chapter>\z@ \thechapter.\fi\arabic{literalblock}}
+ \def\theHliteralblock {\theHchapter.\arabic{literalblock}}}
+% at start of caption title
+\newcommand*{\fnum@literalblock}{\literalblockname\nobreakspace\theliteralblock}
+% this will be overwritten in document preamble by Babel translation
+\newcommand*{\literalblockname}{Listing }
+% file extension needed for \caption's good functioning, the file is created
+% only if a \listof{literalblock}{foo} command is encountered, which is
+% analogous to \listoffigures, but for the code listings (foo = chosen title.)
+\newcommand*{\ext@literalblock}{lol}
+
+% The title (caption) is specified from outside as macro \sphinxVerbatimTitle.
+% \sphinxVerbatimTitle is reset to empty after each use of Verbatim.
+\newcommand*\sphinxVerbatimTitle {}
+% This box to typeset the caption before framed.sty multiple passes for framing.
+\newbox\spx@Verbatim@TitleBox
+% Holder macro for labels of literal blocks. Set-up by LaTeX writer.
+\newcommand*\sphinxLiteralBlockLabel {}
+\newcommand*\sphinxSetupCaptionForVerbatim [1]
+{%
+ \needspace{\sphinxliteralblockneedspace}%
+% insert a \label via \sphinxLiteralBlockLabel
+% reset to normal the color for the literal block caption
+% the caption inserts \abovecaptionskip whitespace above itself (usually 10pt)
+% there is also \belowcaptionskip but it is usually zero, hence the \smallskip
+ \def\sphinxVerbatimTitle
+ {\py@NormalColor
+ \captionof{literalblock}{\sphinxLiteralBlockLabel #1}\smallskip }%
+}
+\newcommand*\sphinxSetupCodeBlockInFootnote {%
+ \fvset{fontsize=\footnotesize}\let\caption\sphinxfigcaption
+ \sphinxverbatimwithminipagetrue % reduces vertical spaces
+ % we counteract float.sty's \caption which does \@normalsize
+ \let\normalsize\footnotesize\let\@parboxrestore\relax
+ \abovecaptionskip \smallskipamount \belowcaptionskip \z@skip}
+
+\newif\ifspx@inframed % flag set if we are already in a framed environment
+% if forced use of minipage encapsulation is needed (e.g. table cells)
+\newif\ifsphinxverbatimwithminipage \sphinxverbatimwithminipagefalse
+\long\def\spx@colorbox #1#2#3{%
+% let the framing obey the current indentation (adapted from framed.sty's code).
+ \hskip\@totalleftmargin
+ \hskip-\fboxsep\hskip-\fboxrule
+ \spx@fcolorbox{VerbatimBorderColor}{VerbatimColor}{#1}{#2}{#3}%
+ \hskip-\fboxsep\hskip-\fboxrule
+ \hskip-\linewidth \hskip-\@totalleftmargin \hskip\columnwidth
+}
+% use of \color@b@x here is compatible with both xcolor.sty and color.sty
+\long\def\spx@fcolorbox #1#2#3#4%
+ {\color@b@x {\color{#1}\spx@VerbatimFBox{#3}{#4}}{\color{#2}}}%
+% Frame drawing macro
+% #1 = used by default for title above frame, may contain "continued" hint
+% #2 = for material underneath frame, used for "continues on next page" hint
+% #3 = actual contents with background color
+\long\def\spx@VerbatimFBox#1#2#3{%
+ \leavevmode
+ \begingroup
+ \setbox\@tempboxa\hbox{{#3}}% inner braces to avoid color leaks
+ \hbox
+ {\lower\dimexpr\fboxrule+\dp\@tempboxa\hbox{%
+ \vbox{#1% above frame
+ % draw frame border _latest_ to avoid pdf viewer issue
+ \kern\fboxrule
+ \hbox{\kern\fboxrule
+ \copy\@tempboxa
+ \kern-\wd\@tempboxa\kern-\fboxrule
+ \vrule\@width\fboxrule
+ \kern\wd\@tempboxa
+ \vrule\@width\fboxrule}%
+ \kern-\dimexpr\ht\@tempboxa+\dp\@tempboxa+\fboxrule\relax
+ \hrule\@height\fboxrule
+ \kern\dimexpr\ht\@tempboxa+\dp\@tempboxa\relax
+ \hrule\@height\fboxrule
+ #2% below frame
+ }%
+ }%
+ }%
+ \endgroup
+}
+
+% Customize framed.sty \MakeFramed to glue caption to literal block
+% and add optional hint "continued on next page"
+\def\spx@Verbatim@FrameCommand
+ {\spx@colorbox\spx@Verbatim@Title{}}%
+% Macros for a frame with page breaks:
+\def\spx@Verbatim@FirstFrameCommand
+ {\spx@colorbox\spx@Verbatim@Title\spx@Verbatim@Continues}%
+\def\spx@Verbatim@MidFrameCommand
+ {\spx@colorbox\spx@Verbatim@Continued\spx@Verbatim@Continues}%
+\def\spx@Verbatim@LastFrameCommand
+ {\spx@colorbox\spx@Verbatim@Continued{}}%
+
+\def\spx@Verbatim@Title{% hide width from framed.sty measuring
+ \moveright\dimexpr\fboxrule+.5\wd\@tempboxa
+ \hb@xt@\z@{\hss\unhcopy\spx@Verbatim@TitleBox\hss}%
+}%
+\def\spx@Verbatim@Continued{%
+ \moveright\dimexpr\fboxrule+\wd\@tempboxa-\fboxsep
+ \hb@xt@\z@{\hss
+ {\normalcolor\sphinxstylecodecontinued\literalblockcontinuedname}}%
+}%
+\def\spx@Verbatim@Continues{%
+ \moveright\dimexpr\fboxrule+\wd\@tempboxa-\fboxsep
+ \hb@xt@\z@{\hss
+ {\normalcolor\sphinxstylecodecontinues\literalblockcontinuesname}}%
+}%
+% Defaults are redefined in document preamble according to language
+\newcommand*\literalblockcontinuedname{continued from previous page}%
+\newcommand*\literalblockcontinuesname{continues on next page}%
+
+% For linebreaks inside Verbatim environment from package fancyvrb.
+\newbox\sphinxcontinuationbox
+\newbox\sphinxvisiblespacebox
+\newcommand*\sphinxafterbreak {\copy\sphinxcontinuationbox}
+
+% Take advantage of the already applied Pygments mark-up to insert
+% potential linebreaks for TeX processing.
+% {, <, #, %, $, ' and ": go to next line.
+% _, }, ^, &, >, - and ~: stay at end of broken line.
+% Use of \textquotesingle for straight quote.
+% FIXME: convert this to package options ?
+\newcommand*\sphinxbreaksbeforelist {%
+ \do\PYGZob\{\do\PYGZlt\<\do\PYGZsh\#\do\PYGZpc\%% {, <, #, %,
+ \do\PYGZdl\$\do\PYGZdq\"% $, "
+ \def\PYGZsq
+ {\discretionary{}{\sphinxafterbreak\textquotesingle}{\textquotesingle}}% '
+}
+\newcommand*\sphinxbreaksafterlist {%
+ \do\PYGZus\_\do\PYGZcb\}\do\PYGZca\^\do\PYGZam\&% _, }, ^, &,
+ \do\PYGZgt\>\do\PYGZhy\-\do\PYGZti\~% >, -, ~
+}
+\newcommand*\sphinxbreaksatspecials {%
+ \def\do##1##2%
+ {\def##1{\discretionary{}{\sphinxafterbreak\char`##2}{\char`##2}}}%
+ \sphinxbreaksbeforelist
+ \def\do##1##2%
+ {\def##1{\discretionary{\char`##2}{\sphinxafterbreak}{\char`##2}}}%
+ \sphinxbreaksafterlist
+}
+
+\def\sphinx@verbatim@nolig@list {\do \`}%
+% Some characters . , ; ? ! / are not pygmentized.
+% This macro makes them "active" and they will insert potential linebreaks.
+% Not compatible with math mode (cf \sphinxunactivateextras).
+\newcommand*\sphinxbreaksbeforeactivelist {}% none
+\newcommand*\sphinxbreaksafteractivelist {\do\.\do\,\do\;\do\?\do\!\do\/}
+\newcommand*\sphinxbreaksviaactive {%
+ \def\do##1{\lccode`\~`##1%
+ \lowercase{\def~}{\discretionary{}{\sphinxafterbreak\char`##1}{\char`##1}}%
+ \catcode`##1\active}%
+ \sphinxbreaksbeforeactivelist
+ \def\do##1{\lccode`\~`##1%
+ \lowercase{\def~}{\discretionary{\char`##1}{\sphinxafterbreak}{\char`##1}}%
+ \catcode`##1\active}%
+ \sphinxbreaksafteractivelist
+ \lccode`\~`\~
+}
+
+% If the linebreak is at a space, the latter will be displayed as visible
+% space at end of first line, and a continuation symbol starts next line.
+\def\spx@verbatim@space {%
+ \nobreak\hskip\z@skip
+ \discretionary{\copy\sphinxvisiblespacebox}{\sphinxafterbreak}
+ {\kern\fontdimen2\font}%
+}%
+
+% needed to create wrapper environments of fancyvrb's Verbatim
+\newcommand*{\sphinxVerbatimEnvironment}{\gdef\FV@EnvironName{sphinxVerbatim}}
+% serves to implement line highlighting and line wrapping
+\newcommand\sphinxFancyVerbFormatLine[1]{%
+ \expandafter\sphinx@verbatim@checkifhl\expandafter{\the\FV@CodeLineNo}%
+ \ifin@
+ \sphinxVerbatimHighlightLine{#1}%
+ \else
+ \sphinxVerbatimFormatLine{#1}%
+ \fi
+}%
+\newcommand\sphinxVerbatimHighlightLine[1]{%
+ \edef\sphinxrestorefboxsep{\fboxsep\the\fboxsep\relax}%
+ \fboxsep0pt\relax % cf LaTeX bug graphics/4524
+ \colorbox{sphinxVerbatimHighlightColor}%
+ {\sphinxrestorefboxsep\sphinxVerbatimFormatLine{#1}}%
+ % no need to restore \fboxsep here, as this ends up in a \hbox from fancyvrb
+}%
+% \sphinxVerbatimFormatLine will be set locally to one of those two:
+\newcommand\sphinxVerbatimFormatLineWrap[1]{%
+ \hsize\linewidth
+ \vtop{\raggedright\hyphenpenalty\z@\exhyphenpenalty\z@
+ \doublehyphendemerits\z@\finalhyphendemerits\z@
+ \strut #1\strut}%
+}%
+\newcommand\sphinxVerbatimFormatLineNoWrap[1]{\hb@xt@\linewidth{\strut #1\hss}}%
+\g@addto@macro\FV@SetupFont{%
+ \sbox\sphinxcontinuationbox {\spx@opt@verbatimcontinued}%
+ \sbox\sphinxvisiblespacebox {\spx@opt@verbatimvisiblespace}%
+}%
+% Sphinx <1.5 optional argument was in fact mandatory. It is now really
+% optional and handled by original Verbatim.
+\newenvironment{sphinxVerbatim}{%
+ % quit horizontal mode if we are still in a paragraph
+ \par
+ % list starts new par, but we don't want it to be set apart vertically
+ \parskip\z@skip
+ % first, let's check if there is a caption
+ \ifx\sphinxVerbatimTitle\empty
+ \addvspace\z@% counteract possible previous negative skip (French lists!)
+ \smallskip
+ % there was no caption. Check if nevertheless a label was set.
+ \ifx\sphinxLiteralBlockLabel\empty\else
+ % we require some space to be sure hyperlink target from \phantomsection
+ % will not be separated from upcoming verbatim by a page break
+ \needspace{\sphinxliteralblockwithoutcaptionneedspace}%
+ \phantomsection\sphinxLiteralBlockLabel
+ \fi
+ \let\spx@Verbatim@Title\@empty
+ \else
+ % non-empty \sphinxVerbatimTitle has label inside it (in case there is one)
+ \setbox\spx@Verbatim@TitleBox
+ \hbox{\begin{minipage}{\linewidth}%
+ \sphinxVerbatimTitle
+ \end{minipage}}%
+ \fi
+ \fboxsep\sphinxverbatimsep \fboxrule\sphinxverbatimborder
+ % setting borderwidth to zero is simplest for no-frame effect with same pagebreaks
+ \ifspx@opt@verbatimwithframe\else\fboxrule\z@\fi
+ \let\FrameCommand \spx@Verbatim@FrameCommand
+ \let\FirstFrameCommand\spx@Verbatim@FirstFrameCommand
+ \let\MidFrameCommand \spx@Verbatim@MidFrameCommand
+ \let\LastFrameCommand \spx@Verbatim@LastFrameCommand
+ \ifspx@opt@verbatimhintsturnover\else
+ \let\spx@Verbatim@Continued\@empty
+ \let\spx@Verbatim@Continues\@empty
+ \fi
+ \ifspx@opt@verbatimwrapslines
+ % fancyvrb's Verbatim puts each input line in (unbreakable) horizontal boxes.
+ % This customization wraps each line from the input in a \vtop, thus
+ % allowing it to wrap and display on two or more lines in the latex output.
+ % - The codeline counter will be increased only once.
+ % - The wrapped material will not break across pages, it is impossible
+ % to achieve this without extensive rewrite of fancyvrb.
+ % - The (not used in sphinx) obeytabs option to Verbatim is
+ % broken by this change (showtabs and tabspace work).
+ \let\sphinxVerbatimFormatLine\sphinxVerbatimFormatLineWrap
+ \let\FV@Space\spx@verbatim@space
+ % Allow breaks at special characters using \PYG... macros.
+ \sphinxbreaksatspecials
+ % Breaks at punctuation characters . , ; ? ! and / (needs catcode activation)
+ \fvset{codes*=\sphinxbreaksviaactive}%
+ \else % end of conditional code for wrapping long code lines
+ \let\sphinxVerbatimFormatLine\sphinxVerbatimFormatLineNoWrap
+ \fi
+ \let\FancyVerbFormatLine\sphinxFancyVerbFormatLine
+ % workaround to fancyvrb's check of \@currenvir
+ \let\VerbatimEnvironment\sphinxVerbatimEnvironment
+ % workaround to fancyvrb's check of current list depth
+ \def\@toodeep {\advance\@listdepth\@ne}%
+ % The list environment is needed to control perfectly the vertical space.
+ % Note: \OuterFrameSep used by framed.sty is later set to \topsep hence 0pt.
+ % - if caption: vertical space above caption = (\abovecaptionskip + D) with
+ % D = \baselineskip-\FrameHeightAdjust, and then \smallskip above frame.
+ % - if no caption: (\smallskip + D) above frame. By default D=6pt.
+ % Use trivlist rather than list to avoid possible "too deeply nested" error.
+ \itemsep \z@skip
+ \topsep \z@skip
+ \partopsep \z@skip% trivlist will set \parsep to \parskip = zero (see above)
+ % \leftmargin will be set to zero by trivlist
+ \rightmargin\z@
+ \parindent \z@% becomes \itemindent. Default zero, but perhaps overwritten.
+ \trivlist\item\relax
+ \ifsphinxverbatimwithminipage\spx@inframedtrue\fi
+ % use a minipage if we are already inside a framed environment
+ \ifspx@inframed\noindent\begin{minipage}{\linewidth}\fi
+ \MakeFramed {% adapted over from framed.sty's snugshade environment
+ \advance\hsize-\width\@totalleftmargin\z@\linewidth\hsize\@setminipage
+ }%
+ % For grid placement from \strut's in \FancyVerbFormatLine
+ \lineskip\z@skip
+ % active comma should not be overwritten by \@noligs
+ \ifspx@opt@verbatimwrapslines
+ \let\verbatim@nolig@list \sphinx@verbatim@nolig@list
+ \fi
+ % will fetch its optional arguments if any
+ \OriginalVerbatim
+}
+{%
+ \endOriginalVerbatim
+ \par\unskip\@minipagefalse\endMakeFramed % from framed.sty snugshade
+ \ifspx@inframed\end{minipage}\fi
+ \endtrivlist
+}
+\newenvironment {sphinxVerbatimNoFrame}
+ {\spx@opt@verbatimwithframefalse
+ % needed for fancyvrb as literal code will end in \end{sphinxVerbatimNoFrame}
+ \def\sphinxVerbatimEnvironment{\gdef\FV@EnvironName{sphinxVerbatimNoFrame}}%
+ \begin{sphinxVerbatim}}
+ {\end{sphinxVerbatim}}
+\newenvironment {sphinxVerbatimintable}
+ {% don't use a frame if in a table cell
+ \spx@opt@verbatimwithframefalse
+ \sphinxverbatimwithminipagetrue
+ % counteract longtable redefinition of caption
+ \let\caption\sphinxfigcaption
+ % reduce above caption space if in a table cell
+ \abovecaptionskip\smallskipamount
+ \def\sphinxVerbatimEnvironment{\gdef\FV@EnvironName{sphinxVerbatimintable}}%
+ \begin{sphinxVerbatim}}
+ {\end{sphinxVerbatim}}
+
+
+%% PARSED LITERALS
+% allow long lines to wrap like they do in code-blocks
+
+% this should be kept in sync with definitions in sphinx.util.texescape
+\newcommand*\sphinxbreaksattexescapedchars{%
+ \def\do##1##2% put potential break point before character
+ {\def##1{\discretionary{}{\sphinxafterbreak\char`##2}{\char`##2}}}%
+ \do\{\{\do\textless\<\do\#\#\do\%\%\do\$\$% {, <, #, %, $
+ \def\do##1##2% put potential break point after character
+ {\def##1{\discretionary{\char`##2}{\sphinxafterbreak}{\char`##2}}}%
+ \do\_\_\do\}\}\do\textasciicircum\^\do\&\&% _, }, ^, &,
+ \do\textgreater\>\do\textasciitilde\~% >, ~
+}
+\newcommand*\sphinxbreaksviaactiveinparsedliteral{%
+ \sphinxbreaksviaactive % by default handles . , ; ? ! /
+ \do\-% we need also the hyphen character (ends up "as is" in parsed-literal)
+ \lccode`\~`\~ %
+ % update \dospecials as it is used by \url
+ % but deactivation will already have been done hence this is unneeded:
+ % \expandafter\def\expandafter\dospecials\expandafter{\dospecials
+ % \sphinxbreaksbeforeactivelist\sphinxbreaksafteractivelist\do\-}%
+}
+\newcommand*\sphinxbreaksatspaceinparsedliteral{%
+ \lccode`~32 \lowercase{\let~}\spx@verbatim@space\lccode`\~`\~
+}
+\newcommand*{\sphinxunactivateextras}{\let\do\@makeother
+ \sphinxbreaksbeforeactivelist\sphinxbreaksafteractivelist\do\-}%
+% the \catcode13=5\relax (deactivate end of input lines) is left to callers
+\newcommand*{\sphinxunactivateextrasandspace}{\catcode32=10\relax
+ \sphinxunactivateextras}%
+% now for the modified alltt environment
+\newenvironment{sphinxalltt}
+{% at start of next line to workaround Emacs/AUCTeX issue with this file
+\begin{alltt}%
+ \ifspx@opt@parsedliteralwraps
+ \sbox\sphinxcontinuationbox {\spx@opt@verbatimcontinued}%
+ \sbox\sphinxvisiblespacebox {\spx@opt@verbatimvisiblespace}%
+ \sphinxbreaksattexescapedchars
+ \sphinxbreaksviaactiveinparsedliteral
+ \sphinxbreaksatspaceinparsedliteral
+% alltt takes care of the ' as derivative ("prime") in math mode
+ \everymath\expandafter{\the\everymath\sphinxunactivateextrasandspace
+ \catcode`\<=12\catcode`\>=12\catcode`\^=7\catcode`\_=8 }%
+% not sure if displayed math (align,...) can end up in parsed-literal, anyway
+ \everydisplay\expandafter{\the\everydisplay
+ \catcode13=5 \sphinxunactivateextrasandspace
+ \catcode`\<=12\catcode`\>=12\catcode`\^=7\catcode`\_=8 }%
+ \fi }
+{\end{alltt}}
+
+% Protect \href's first argument in contexts such as sphinxalltt (or
+% \sphinxcode). Sphinx uses \#, \%, \& ... always inside \sphinxhref.
+\protected\def\sphinxhref#1#2{{%
+ \sphinxunactivateextrasandspace % never do \scantokens with active space!
+ \endlinechar\m@ne\everyeof{{#2}}% keep catcode regime for #2
+ \scantokens{\href{#1}}% normalise it for #1 during \href expansion
+}}
+% Same for \url. And also \nolinkurl for coherence.
+\protected\def\sphinxurl#1{{%
+ \sphinxunactivateextrasandspace\everyeof{}% (<- precaution for \scantokens)
+ \endlinechar\m@ne\scantokens{\url{#1}}%
+}}
+\protected\def\sphinxnolinkurl#1{{%
+ \sphinxunactivateextrasandspace\everyeof{}%
+ \endlinechar\m@ne\scantokens{\nolinkurl{#1}}%
+}}
+
+
+%% TOPIC AND CONTENTS BOXES
+%
+% Again based on use of "framed.sty", this allows breakable framed boxes.
+\long\def\spx@ShadowFBox#1{%
+ \leavevmode\begingroup
+ % first we frame the box #1
+ \setbox\@tempboxa
+ \hbox{\vrule\@width\sphinxshadowrule
+ \vbox{\hrule\@height\sphinxshadowrule
+ \kern\sphinxshadowsep
+ \hbox{\kern\sphinxshadowsep #1\kern\sphinxshadowsep}%
+ \kern\sphinxshadowsep
+ \hrule\@height\sphinxshadowrule}%
+ \vrule\@width\sphinxshadowrule}%
+ % Now we add the shadow, like \shadowbox from fancybox.sty would do
+ \dimen@\dimexpr.5\sphinxshadowrule+\sphinxshadowsize\relax
+ \hbox{\vbox{\offinterlineskip
+ \hbox{\copy\@tempboxa\kern-.5\sphinxshadowrule
+ % add shadow on right side
+ \lower\sphinxshadowsize
+ \hbox{\vrule\@height\ht\@tempboxa \@width\dimen@}%
+ }%
+ \kern-\dimen@ % shift back vertically to bottom of frame
+ % and add shadow at bottom
+ \moveright\sphinxshadowsize
+ \vbox{\hrule\@width\wd\@tempboxa \@height\dimen@}%
+ }%
+ % move left by the size of right shadow so shadow adds no width
+ \kern-\sphinxshadowsize
+ }%
+ \endgroup
+}
+
+% use framed.sty to allow page breaks in frame+shadow
+% works well inside Lists and Quote-like environments
+% produced by ``topic'' directive (or local contents)
+% could nest if LaTeX writer authorized it
+\newenvironment{sphinxShadowBox}
+ {\def\FrameCommand {\spx@ShadowFBox }%
+ % configure framed.sty not to add extra vertical spacing
+ \ltx@ifundefined{OuterFrameSep}{}{\OuterFrameSep\z@skip}%
+ % the \trivlist will add the vertical spacing on top and bottom which is
+ % typical of center environment as used in Sphinx <= 1.4.1
+ % the \noindent has the effet of an extra blank line on top, to
+ % imitate closely the layout from Sphinx <= 1.4.1; the \FrameHeightAdjust
+ % will put top part of frame on this baseline.
+ \def\FrameHeightAdjust {\baselineskip}%
+ % use package footnote to handle footnotes
+ \savenotes
+ \trivlist\item\noindent
+ % use a minipage if we are already inside a framed environment
+ \ifspx@inframed\begin{minipage}{\linewidth}\fi
+ \MakeFramed {\spx@inframedtrue
+ % framed.sty puts into "\width" the added width (=2shadowsep+2shadowrule)
+ % adjust \hsize to what the contents must use
+ \advance\hsize-\width
+ % adjust LaTeX parameters to behave properly in indented/quoted contexts
+ \FrameRestore
+ % typeset the contents as in a minipage (Sphinx <= 1.4.1 used a minipage and
+ % itemize/enumerate are therein typeset more tightly, we want to keep
+ % that). We copy-paste from LaTeX source code but don't do a real minipage.
+ \@pboxswfalse
+ \let\@listdepth\@mplistdepth \@mplistdepth\z@
+ \@minipagerestore
+ \@setminipage
+ }%
+ }%
+ {% insert the "endminipage" code
+ \par\unskip
+ \@minipagefalse
+ \endMakeFramed
+ \ifspx@inframed\end{minipage}\fi
+ \endtrivlist
+ % output the stored footnotes
+ \spewnotes
+ }
+
+
+%% NOTICES AND ADMONITIONS
+%
+% Some are quite plain
+% the spx@notice@bordercolor etc are set in the sphinxadmonition environment
+\newenvironment{sphinxlightbox}{%
+ \par\allowbreak
+ \noindent{\color{spx@notice@bordercolor}%
+ \rule{\linewidth}{\spx@notice@border}}\par\nobreak
+ {\parskip\z@skip\noindent}%
+ }
+ {%
+ \par
+ % counteract previous possible negative skip (French lists!):
+ % (we can't cancel that any earlier \vskip introduced a potential pagebreak)
+ \ifdim\lastskip<\z@\vskip-\lastskip\fi
+ \nobreak\vbox{\noindent\kern\@totalleftmargin
+ {\color{spx@notice@bordercolor}%
+ \rule[\dimexpr.4\baselineskip-\spx@notice@border\relax]
+ {\linewidth}{\spx@notice@border}}\hss}\allowbreak
+ }% end of sphinxlightbox environment definition
+% may be renewenvironment'd by user for complete customization
+\newenvironment{sphinxnote}[1]
+ {\begin{sphinxlightbox}\sphinxstrong{#1} }{\end{sphinxlightbox}}
+\newenvironment{sphinxhint}[1]
+ {\begin{sphinxlightbox}\sphinxstrong{#1} }{\end{sphinxlightbox}}
+\newenvironment{sphinximportant}[1]
+ {\begin{sphinxlightbox}\sphinxstrong{#1} }{\end{sphinxlightbox}}
+\newenvironment{sphinxtip}[1]
+ {\begin{sphinxlightbox}\sphinxstrong{#1} }{\end{sphinxlightbox}}
+% or just use the package options
+% these are needed for common handling by notice environment of lightbox
+% and heavybox but they are currently not used by lightbox environment
+% and there is consequently no corresponding package option
+\definecolor{sphinxnoteBgColor}{rgb}{1,1,1}
+\definecolor{sphinxhintBgColor}{rgb}{1,1,1}
+\definecolor{sphinximportantBgColor}{rgb}{1,1,1}
+\definecolor{sphinxtipBgColor}{rgb}{1,1,1}
+
+% Others get more distinction
+% Code adapted from framed.sty's "snugshade" environment.
+% Nesting works (inner frames do not allow page breaks).
+\newenvironment{sphinxheavybox}{\par
+ \setlength{\FrameRule}{\spx@notice@border}%
+ \setlength{\FrameSep}{\dimexpr.6\baselineskip-\FrameRule\relax}
+ % configure framed.sty's parameters to obtain same vertical spacing
+ % as for "light" boxes. We need for this to manually insert parskip glue and
+ % revert a skip done by framed before the frame.
+ \ltx@ifundefined{OuterFrameSep}{}{\OuterFrameSep\z@skip}%
+ \vspace{\FrameHeightAdjust}
+ % copied/adapted from framed.sty's snugshade
+ \def\FrameCommand##1{\hskip\@totalleftmargin
+ \fboxsep\FrameSep \fboxrule\FrameRule
+ \fcolorbox{spx@notice@bordercolor}{spx@notice@bgcolor}{##1}%
+ \hskip-\linewidth \hskip-\@totalleftmargin \hskip\columnwidth}%
+ \savenotes
+ % use a minipage if we are already inside a framed environment
+ \ifspx@inframed
+ \noindent\begin{minipage}{\linewidth}
+ \else
+ % handle case where notice is first thing in a list item (or is quoted)
+ \if@inlabel
+ \noindent\par\vspace{-\baselineskip}
+ \else
+ \vspace{\parskip}
+ \fi
+ \fi
+ \MakeFramed {\spx@inframedtrue
+ \advance\hsize-\width \@totalleftmargin\z@ \linewidth\hsize
+ % minipage initialization copied from LaTeX source code.
+ \@pboxswfalse
+ \let\@listdepth\@mplistdepth \@mplistdepth\z@
+ \@minipagerestore
+ \@setminipage }%
+ }
+ {%
+ \par\unskip
+ \@minipagefalse
+ \endMakeFramed
+ \ifspx@inframed\end{minipage}\fi
+ % set footnotes at bottom of page
+ \spewnotes
+ % arrange for similar spacing below frame as for "light" boxes.
+ \vskip .4\baselineskip
+ }% end of sphinxheavybox environment definition
+% may be renewenvironment'd by user for complete customization
+\newenvironment{sphinxwarning}[1]
+ {\begin{sphinxheavybox}\sphinxstrong{#1} }{\end{sphinxheavybox}}
+\newenvironment{sphinxcaution}[1]
+ {\begin{sphinxheavybox}\sphinxstrong{#1} }{\end{sphinxheavybox}}
+\newenvironment{sphinxattention}[1]
+ {\begin{sphinxheavybox}\sphinxstrong{#1} }{\end{sphinxheavybox}}
+\newenvironment{sphinxdanger}[1]
+ {\begin{sphinxheavybox}\sphinxstrong{#1} }{\end{sphinxheavybox}}
+\newenvironment{sphinxerror}[1]
+ {\begin{sphinxheavybox}\sphinxstrong{#1} }{\end{sphinxheavybox}}
+% or just use package options
+
+% the \colorlet of xcolor (if at all loaded) is overkill for our use case
+\newcommand{\sphinxcolorlet}[2]
+ {\expandafter\let\csname\@backslashchar color@#1\expandafter\endcsname
+ \csname\@backslashchar color@#2\endcsname }
+
+% the main dispatch for all types of notices
+\newenvironment{sphinxadmonition}[2]{% #1=type, #2=heading
+ % can't use #1 directly in definition of end part
+ \def\spx@noticetype {#1}%
+ % set parameters of heavybox/lightbox
+ \sphinxcolorlet{spx@notice@bordercolor}{sphinx#1BorderColor}%
+ \sphinxcolorlet{spx@notice@bgcolor}{sphinx#1BgColor}%
+ \spx@notice@border \dimexpr\csname spx@opt@#1border\endcsname\relax
+ % start specific environment, passing the heading as argument
+ \begin{sphinx#1}{#2}}
+ % workaround some LaTeX "feature" of \end command
+ {\edef\spx@temp{\noexpand\end{sphinx\spx@noticetype}}\spx@temp}
+% use of ``notice'' is for backwards compatibility and will be removed in
+% Sphinx 1.7.
+\newenvironment{notice}
+ {\sphinxdeprecationwarning {notice}{1.6}{1.7}{%
+ This document was probably built with a Sphinx extension using ``notice''^^J
+ environment. At Sphinx 1.7, ``notice'' environment will be removed. Please^^J
+ report to extension author to use ``sphinxadmonition'' instead.^^J%
+ ****}\begin{sphinxadmonition}}{\end{sphinxadmonition}}
+
+
+%% PYTHON DOCS MACROS AND ENVIRONMENTS
+% (some macros here used by \maketitle in sphinxmanual.cls and sphinxhowto.cls)
+
+% \moduleauthor{name}{email}
+\newcommand{\moduleauthor}[2]{}
+
+% \sectionauthor{name}{email}
+\newcommand{\sectionauthor}[2]{}
+
+% Allow the release number to be specified independently of the
+% \date{}. This allows the date to reflect the document's date and
+% release to specify the release that is documented.
+%
+\newcommand{\py@release}{}
+\newcommand{\version}{}
+\newcommand{\shortversion}{}
+\newcommand{\releaseinfo}{}
+\newcommand{\releasename}{Release}
+\newcommand{\release}[1]{%
+ \renewcommand{\py@release}{\releasename\space\version}%
+ \renewcommand{\version}{#1}}
+\newcommand{\setshortversion}[1]{%
+ \renewcommand{\shortversion}{#1}}
+\newcommand{\setreleaseinfo}[1]{%
+ \renewcommand{\releaseinfo}{#1}}
+
+% Allow specification of the author's address separately from the
+% author's name. This can be used to format them differently, which
+% is a good thing.
+%
+\newcommand{\py@authoraddress}{}
+\newcommand{\authoraddress}[1]{\renewcommand{\py@authoraddress}{#1}}
+
+% {fulllineitems} is the main environment for object descriptions.
+%
+\newcommand{\py@itemnewline}[1]{%
+ \kern\labelsep
+ \@tempdima\linewidth
+ \advance\@tempdima \labelwidth\makebox[\@tempdima][l]{#1}%
+ \kern-\labelsep
+}
+
+\newenvironment{fulllineitems}{%
+ \begin{list}{}{\labelwidth \leftmargin
+ \rightmargin \z@ \topsep -\parskip \partopsep \parskip
+ \itemsep -\parsep
+ \let\makelabel=\py@itemnewline}%
+}{\end{list}}
+
+% Signatures, possibly multi-line
+%
+\newlength{\py@argswidth}
+\newcommand{\py@sigparams}[2]{%
+ \parbox[t]{\py@argswidth}{#1\sphinxcode{)}#2}}
+\newcommand{\pysigline}[1]{\item[{#1}]}
+\newcommand{\pysiglinewithargsret}[3]{%
+ \settowidth{\py@argswidth}{#1\sphinxcode{(}}%
+ \addtolength{\py@argswidth}{-2\py@argswidth}%
+ \addtolength{\py@argswidth}{\linewidth}%
+ \item[{#1\sphinxcode{(}\py@sigparams{#2}{#3}}]}
+\newcommand{\pysigstartmultiline}{%
+ \def\pysigstartmultiline{\vskip\smallskipamount\parskip\z@skip\itemsep\z@skip}%
+ \edef\pysigstopmultiline
+ {\noexpand\leavevmode\parskip\the\parskip\relax\itemsep\the\itemsep\relax}%
+ \parskip\z@skip\itemsep\z@skip
+}
+
+% Production lists
+%
+\newenvironment{productionlist}{%
+% \def\sphinxoptional##1{{\Large[}##1{\Large]}}
+ \def\production##1##2{\\\sphinxcode{##1}&::=&\sphinxcode{##2}}%
+ \def\productioncont##1{\\& &\sphinxcode{##1}}%
+ \parindent=2em
+ \indent
+ \setlength{\LTpre}{0pt}%
+ \setlength{\LTpost}{0pt}%
+ \begin{longtable}[l]{lcl}
+}{%
+ \end{longtable}
+}
+
+% Definition lists; requested by AMK for HOWTO documents. Probably useful
+% elsewhere as well, so keep in in the general style support.
+%
+\newenvironment{definitions}{%
+ \begin{description}%
+ \def\term##1{\item[{##1}]\mbox{}\\*[0mm]}%
+}{%
+ \end{description}%
+}
+
+%% FROM DOCTUTILS LATEX WRITER
+%
+% The following is stuff copied from docutils' latex writer.
+%
+\newcommand{\optionlistlabel}[1]{\normalfont\bfseries #1 \hfill}% \bf deprecated
+\newenvironment{optionlist}[1]
+{\begin{list}{}
+ {\setlength{\labelwidth}{#1}
+ \setlength{\rightmargin}{1cm}
+ \setlength{\leftmargin}{\rightmargin}
+ \addtolength{\leftmargin}{\labelwidth}
+ \addtolength{\leftmargin}{\labelsep}
+ \renewcommand{\makelabel}{\optionlistlabel}}
+}{\end{list}}
+
+\newlength{\lineblockindentation}
+\setlength{\lineblockindentation}{2.5em}
+\newenvironment{lineblock}[1]
+{\begin{list}{}
+ {\setlength{\partopsep}{\parskip}
+ \addtolength{\partopsep}{\baselineskip}
+ \topsep0pt\itemsep0.15\baselineskip\parsep0pt
+ \leftmargin#1\relax}
+ \raggedright}
+{\end{list}}
+
+% From docutils.writers.latex2e
+% inline markup (custom roles)
+% \DUrole{#1}{#2} tries \DUrole#1{#2}
+\providecommand*{\DUrole}[2]{%
+ \ifcsname DUrole\detokenize{#1}\endcsname
+ \csname DUrole\detokenize{#1}\endcsname{#2}%
+ \else% backwards compatibility: try \docutilsrole#1{#2}
+ \ifcsname docutilsrole\detokenize{#1}\endcsname
+ \csname docutilsrole\detokenize{#1}\endcsname{#2}%
+ \else
+ #2%
+ \fi
+ \fi
+}
+
+\providecommand*{\DUprovidelength}[2]{%
+ \ifdefined#1\else\newlength{#1}\setlength{#1}{#2}\fi
+}
+
+\DUprovidelength{\DUlineblockindent}{2.5em}
+\ifdefined\DUlineblock\else
+ \newenvironment{DUlineblock}[1]{%
+ \list{}{\setlength{\partopsep}{\parskip}
+ \addtolength{\partopsep}{\baselineskip}
+ \setlength{\topsep}{0pt}
+ \setlength{\itemsep}{0.15\baselineskip}
+ \setlength{\parsep}{0pt}
+ \setlength{\leftmargin}{#1}}
+ \raggedright
+ }
+ {\endlist}
+\fi
+
+%% TEXT STYLING
+%
+% Some custom font markup commands.
+% *** the macros without \sphinx prefix are still defined farther down ***
+\protected\def\sphinxstrong#1{{\textbf{#1}}}
+% to obtain straight quotes we execute \@noligs as patched by upquote, and
+% \scantokens is needed in cases where it would be too late for the macro to
+% first set catcodes and then fetch its argument. We also make the contents
+% breakable at non-escaped . , ; ? ! / using \sphinxbreaksviaactive.
+% the macro must be protected if it ends up used in moving arguments,
+% in 'alltt' \@noligs is done already, and the \scantokens must be avoided.
+\protected\def\sphinxcode#1{{\def\@tempa{alltt}%
+ \ifx\@tempa\@currenvir\else
+ \ifspx@opt@inlineliteralwraps
+ \sphinxbreaksviaactive\let\sphinxafterbreak\empty
+ % do not overwrite the comma set-up
+ \let\verbatim@nolig@list\sphinx@literal@nolig@list
+ \fi
+ % fix a space-gobbling issue due to LaTeX's original \do@noligs
+ \let\do@noligs\sphinx@do@noligs
+ \@noligs\endlinechar\m@ne\everyeof{}% (<- in case inside \sphinxhref)
+ \expandafter\scantokens
+ \fi {\texttt{#1}}}}
+\def\sphinx@do@noligs #1{\catcode`#1\active\begingroup\lccode`\~`#1\relax
+ \lowercase{\endgroup\def~{\leavevmode\kern\z@\char`#1 }}}
+\def\sphinx@literal@nolig@list {\do\`\do\<\do\>\do\'\do\-}%
+
+\protected\def\sphinxbfcode#1{\sphinxcode{\bfseries{}#1}}
+\protected\def\sphinxemail#1{\textsf{#1}}
+\protected\def\sphinxtablecontinued#1{\textsf{#1}}
+\protected\def\sphinxtitleref#1{\emph{#1}}
+\protected\def\sphinxmenuselection#1{\emph{#1}}
+\protected\def\sphinxaccelerator#1{\underline{#1}}
+\protected\def\sphinxcrossref#1{\emph{#1}}
+\protected\def\sphinxtermref#1{\emph{#1}}
+% \optional is used for ``[, arg]``, i.e. desc_optional nodes.
+\long\protected\def\sphinxoptional#1{%
+ {\textnormal{\Large[}}{#1}\hspace{0.5mm}{\textnormal{\Large]}}}
+
+\ifspx@opt@dontkeepoldnames\else
+ \let\spx@alreadydefinedlist\@empty
+ \typeout{** (sphinx) defining (legacy) text style macros without \string\sphinx\space prefix}
+ \typeout{** if clashes with packages, do not set latex_keep_old_macro_names=True
+ in conf.py}
+ \@for\@tempa:=code,strong,bfcode,email,tablecontinued,titleref,%
+ menuselection,accelerator,crossref,termref,optional\do
+ {% first, check if command with no prefix already exists
+ \ltx@ifundefined{\@tempa}{%
+ % give it the meaning defined so far with \sphinx prefix
+ \expandafter\let\csname\@tempa\expandafter\endcsname
+ \csname sphinx\@tempa\endcsname
+ % redefine the \sphinx prefixed macro to expand to non-prefixed one
+ \expandafter\def\csname sphinx\@tempa\expandafter\endcsname
+ \expandafter{\csname\@tempa\endcsname}%
+ }{\edef\spx@alreadydefinedlist{\spx@alreadydefinedlist{\@tempa}}}%
+ }%
+ \ifx\spx@alreadydefinedlist\@empty\else
+ \expandafter\@tfor\expandafter\@tempa\expandafter:\expandafter=\spx@alreadydefinedlist\do
+ {% emit warning now
+ \PackageWarning{sphinx}{not redefining already existing \@backslashchar\@tempa\space!^^J%
+ Anyhow, Sphinx mark-up uses only \string\sphinx\@tempa.}%
+ % and also at end of log for better visibility
+ \expandafter\sphinxdeprecationwarning\expandafter{\csname\@tempa\endcsname}{1.6}{1.7}
+ {\sphinxdeprecatedmacro already existed at Sphinx loading time! Not redefined!^^J
+ Sphinx mark-up uses only \string\sphinx\expandafter\@gobble\sphinxdeprecatedmacro.^^J
+ Note: if this warning is about macro \string\strong, it presumably results^^J
+ from fontspec 2.6 having defined it prior to Sphinx. No need for alarm!}%
+ }%
+ \fi
+ \sphinxdeprecationwarning{latex_keep_old_macro_names=True}{1.6}{1.7}{}%
+\fi
+
+% additional customizable styling
+% FIXME: convert this to package options ?
+\protected\def\sphinxstyleindexentry {\texttt}
+\protected\def\sphinxstyleindexextra #1{ \emph{(#1)}}
+\protected\def\sphinxstyleindexpageref {, \pageref}
+\protected\def\sphinxstyletopictitle #1{\textbf{#1}\par\medskip}
+\let\sphinxstylesidebartitle\sphinxstyletopictitle
+\protected\def\sphinxstyleothertitle {\textbf}
+\protected\def\sphinxstylesidebarsubtitle #1{~\\\textbf{#1} \smallskip}
+% \text.. commands do not allow multiple paragraphs
+\let\sphinxstylethead\empty
+\protected\def\sphinxstyletheadfamily {\ifx\sphinxstylethead\empty\sffamily\fi}
+\AtBeginDocument{\ifx\sphinxstylethead\empty\else
+\sphinxdeprecationwarning{\sphinxstylethead}{1.6}{1.7}{%
+ \string\sphinxstyletheadfamily\space replaces it
+ (it defaults to \string\sffamily) to allow use^^J
+ with multiple paragraphs. Backwards compatibility is maintained, but please^^J
+ move customization into \string\sphinxstyletheadfamily\space
+ in time for 1.7.^^J
+ And if you do it now, you will spare yourself this warning!}\fi}
+\protected\def\sphinxstyleemphasis {\emph}
+\protected\def\sphinxstyleliteralemphasis#1{\emph{\sphinxcode{#1}}}
+\protected\def\sphinxstylestrong {\textbf}
+\protected\def\sphinxstyleliteralstrong {\sphinxbfcode}
+\protected\def\sphinxstyleabbreviation {\textsc}
+\protected\def\sphinxstyleliteralintitle {\sphinxcode}
+\newcommand*\sphinxstylecodecontinued[1]{\footnotesize(#1)}%
+\newcommand*\sphinxstylecodecontinues[1]{\footnotesize(#1)}%
+% figure legend comes after caption and may contain arbitrary body elements
+\newenvironment{sphinxlegend}{\par\small}{\par}
+
+% Declare Unicode characters used by linux tree command to pdflatex utf8/utf8x
+\def\spx@bd#1#2{%
+ \leavevmode
+ \begingroup
+ \ifx\spx@bd@height \@undefined\def\spx@bd@height{\baselineskip}\fi
+ \ifx\spx@bd@width \@undefined\setbox0\hbox{0}\def\spx@bd@width{\wd0 }\fi
+ \ifx\spx@bd@thickness\@undefined\def\spx@bd@thickness{.6\p@}\fi
+ \ifx\spx@bd@lower \@undefined\def\spx@bd@lower{\dp\strutbox}\fi
+ \lower\spx@bd@lower#1{#2}%
+ \endgroup
+}%
+\@namedef{sphinx@u2500}% BOX DRAWINGS LIGHT HORIZONTAL
+ {\spx@bd{\vbox to\spx@bd@height}
+ {\vss\hrule\@height\spx@bd@thickness
+ \@width\spx@bd@width\vss}}%
+\@namedef{sphinx@u2502}% BOX DRAWINGS LIGHT VERTICAL
+ {\spx@bd{\hb@xt@\spx@bd@width}
+ {\hss\vrule\@height\spx@bd@height
+ \@width \spx@bd@thickness\hss}}%
+\@namedef{sphinx@u2514}% BOX DRAWINGS LIGHT UP AND RIGHT
+ {\spx@bd{\hb@xt@\spx@bd@width}
+ {\hss\raise.5\spx@bd@height
+ \hb@xt@\z@{\hss\vrule\@height.5\spx@bd@height
+ \@width \spx@bd@thickness\hss}%
+ \vbox to\spx@bd@height{\vss\hrule\@height\spx@bd@thickness
+ \@width.5\spx@bd@width\vss}}}%
+\@namedef{sphinx@u251C}% BOX DRAWINGS LIGHT VERTICAL AND RIGHT
+ {\spx@bd{\hb@xt@\spx@bd@width}
+ {\hss
+ \hb@xt@\z@{\hss\vrule\@height\spx@bd@height
+ \@width \spx@bd@thickness\hss}%
+ \vbox to\spx@bd@height{\vss\hrule\@height\spx@bd@thickness
+ \@width.5\spx@bd@width\vss}}}%
+\protected\def\sphinxunichar#1{\@nameuse{sphinx@u#1}}%
+
+% Tell TeX about pathological hyphenation cases:
+\hyphenation{Base-HTTP-Re-quest-Hand-ler}
+\endinput
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/sphinxhighlight.sty Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,105 @@
+\NeedsTeXFormat{LaTeX2e}[1995/12/01]
+\ProvidesPackage{sphinxhighlight}[2016/05/29 stylesheet for highlighting with pygments]
+
+
+\makeatletter
+\def\PYG@reset{\let\PYG@it=\relax \let\PYG@bf=\relax%
+ \let\PYG@ul=\relax \let\PYG@tc=\relax%
+ \let\PYG@bc=\relax \let\PYG@ff=\relax}
+\def\PYG@tok#1{\csname PYG@tok@#1\endcsname}
+\def\PYG@toks#1+{\ifx\relax#1\empty\else%
+ \PYG@tok{#1}\expandafter\PYG@toks\fi}
+\def\PYG@do#1{\PYG@bc{\PYG@tc{\PYG@ul{%
+ \PYG@it{\PYG@bf{\PYG@ff{#1}}}}}}}
+\def\PYG#1#2{\PYG@reset\PYG@toks#1+\relax+\PYG@do{#2}}
+
+\expandafter\def\csname PYG@tok@gd\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.63,0.00,0.00}{##1}}}
+\expandafter\def\csname PYG@tok@gu\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.50,0.00,0.50}{##1}}}
+\expandafter\def\csname PYG@tok@gt\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.00,0.27,0.87}{##1}}}
+\expandafter\def\csname PYG@tok@gs\endcsname{\let\PYG@bf=\textbf}
+\expandafter\def\csname PYG@tok@gr\endcsname{\def\PYG@tc##1{\textcolor[rgb]{1.00,0.00,0.00}{##1}}}
+\expandafter\def\csname PYG@tok@cm\endcsname{\let\PYG@it=\textit\def\PYG@tc##1{\textcolor[rgb]{0.25,0.50,0.56}{##1}}}
+\expandafter\def\csname PYG@tok@vg\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.73,0.38,0.84}{##1}}}
+\expandafter\def\csname PYG@tok@vi\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.73,0.38,0.84}{##1}}}
+\expandafter\def\csname PYG@tok@vm\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.73,0.38,0.84}{##1}}}
+\expandafter\def\csname PYG@tok@mh\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.13,0.50,0.31}{##1}}}
+\expandafter\def\csname PYG@tok@cs\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.50,0.56}{##1}}\def\PYG@bc##1{\setlength{\fboxsep}{0pt}\colorbox[rgb]{1.00,0.94,0.94}{\strut ##1}}}
+\expandafter\def\csname PYG@tok@ge\endcsname{\let\PYG@it=\textit}
+\expandafter\def\csname PYG@tok@vc\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.73,0.38,0.84}{##1}}}
+\expandafter\def\csname PYG@tok@il\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.13,0.50,0.31}{##1}}}
+\expandafter\def\csname PYG@tok@go\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.20,0.20,0.20}{##1}}}
+\expandafter\def\csname PYG@tok@cp\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@gi\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.00,0.63,0.00}{##1}}}
+\expandafter\def\csname PYG@tok@gh\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.00,0.00,0.50}{##1}}}
+\expandafter\def\csname PYG@tok@ni\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.84,0.33,0.22}{##1}}}
+\expandafter\def\csname PYG@tok@nl\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.00,0.13,0.44}{##1}}}
+\expandafter\def\csname PYG@tok@nn\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.05,0.52,0.71}{##1}}}
+\expandafter\def\csname PYG@tok@no\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.38,0.68,0.84}{##1}}}
+\expandafter\def\csname PYG@tok@na\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@nb\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@nc\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.05,0.52,0.71}{##1}}}
+\expandafter\def\csname PYG@tok@nd\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.33,0.33,0.33}{##1}}}
+\expandafter\def\csname PYG@tok@ne\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@nf\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.02,0.16,0.49}{##1}}}
+\expandafter\def\csname PYG@tok@si\endcsname{\let\PYG@it=\textit\def\PYG@tc##1{\textcolor[rgb]{0.44,0.63,0.82}{##1}}}
+\expandafter\def\csname PYG@tok@s2\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@nt\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.02,0.16,0.45}{##1}}}
+\expandafter\def\csname PYG@tok@nv\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.73,0.38,0.84}{##1}}}
+\expandafter\def\csname PYG@tok@s1\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@dl\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@ch\endcsname{\let\PYG@it=\textit\def\PYG@tc##1{\textcolor[rgb]{0.25,0.50,0.56}{##1}}}
+\expandafter\def\csname PYG@tok@m\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.13,0.50,0.31}{##1}}}
+\expandafter\def\csname PYG@tok@gp\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.78,0.36,0.04}{##1}}}
+\expandafter\def\csname PYG@tok@sh\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@ow\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@sx\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.78,0.36,0.04}{##1}}}
+\expandafter\def\csname PYG@tok@bp\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@c1\endcsname{\let\PYG@it=\textit\def\PYG@tc##1{\textcolor[rgb]{0.25,0.50,0.56}{##1}}}
+\expandafter\def\csname PYG@tok@fm\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.02,0.16,0.49}{##1}}}
+\expandafter\def\csname PYG@tok@o\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.40,0.40,0.40}{##1}}}
+\expandafter\def\csname PYG@tok@kc\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@c\endcsname{\let\PYG@it=\textit\def\PYG@tc##1{\textcolor[rgb]{0.25,0.50,0.56}{##1}}}
+\expandafter\def\csname PYG@tok@mf\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.13,0.50,0.31}{##1}}}
+\expandafter\def\csname PYG@tok@err\endcsname{\def\PYG@bc##1{\setlength{\fboxsep}{0pt}\fcolorbox[rgb]{1.00,0.00,0.00}{1,1,1}{\strut ##1}}}
+\expandafter\def\csname PYG@tok@mb\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.13,0.50,0.31}{##1}}}
+\expandafter\def\csname PYG@tok@ss\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.32,0.47,0.09}{##1}}}
+\expandafter\def\csname PYG@tok@sr\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.14,0.33,0.53}{##1}}}
+\expandafter\def\csname PYG@tok@mo\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.13,0.50,0.31}{##1}}}
+\expandafter\def\csname PYG@tok@kd\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@mi\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.13,0.50,0.31}{##1}}}
+\expandafter\def\csname PYG@tok@kn\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@cpf\endcsname{\let\PYG@it=\textit\def\PYG@tc##1{\textcolor[rgb]{0.25,0.50,0.56}{##1}}}
+\expandafter\def\csname PYG@tok@kr\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@s\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@kp\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@w\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.73,0.73,0.73}{##1}}}
+\expandafter\def\csname PYG@tok@kt\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.56,0.13,0.00}{##1}}}
+\expandafter\def\csname PYG@tok@sc\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@sb\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@sa\endcsname{\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@k\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.00,0.44,0.13}{##1}}}
+\expandafter\def\csname PYG@tok@se\endcsname{\let\PYG@bf=\textbf\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+\expandafter\def\csname PYG@tok@sd\endcsname{\let\PYG@it=\textit\def\PYG@tc##1{\textcolor[rgb]{0.25,0.44,0.63}{##1}}}
+
+\def\PYGZbs{\char`\\}
+\def\PYGZus{\char`\_}
+\def\PYGZob{\char`\{}
+\def\PYGZcb{\char`\}}
+\def\PYGZca{\char`\^}
+\def\PYGZam{\char`\&}
+\def\PYGZlt{\char`\<}
+\def\PYGZgt{\char`\>}
+\def\PYGZsh{\char`\#}
+\def\PYGZpc{\char`\%}
+\def\PYGZdl{\char`\$}
+\def\PYGZhy{\char`\-}
+\def\PYGZsq{\char`\'}
+\def\PYGZdq{\char`\"}
+\def\PYGZti{\char`\~}
+% for compatibility with earlier versions
+\def\PYGZat{@}
+\def\PYGZlb{[}
+\def\PYGZrb{]}
+\makeatother
+
+\renewcommand\PYGZsq{\textquotesingle}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/sphinxhowto.cls Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,94 @@
+%
+% sphinxhowto.cls for Sphinx (http://sphinx-doc.org/)
+%
+
+\NeedsTeXFormat{LaTeX2e}[1995/12/01]
+\ProvidesClass{sphinxhowto}[2017/03/26 v1.6 Document class (Sphinx HOWTO)]
+
+% 'oneside' option overriding the 'twoside' default
+\newif\if@oneside
+\DeclareOption{oneside}{\@onesidetrue}
+% Pass remaining document options to the parent class.
+\DeclareOption*{\PassOptionsToClass{\CurrentOption}{\sphinxdocclass}}
+\ProcessOptions\relax
+
+% Default to two-side document
+\if@oneside
+% nothing to do (oneside is the default)
+\else
+\PassOptionsToClass{twoside}{\sphinxdocclass}
+\fi
+
+\LoadClass{\sphinxdocclass}
+
+% Set some sane defaults for section numbering depth and TOC depth. You can
+% reset these counters in your preamble.
+%
+\setcounter{secnumdepth}{2}
+
+% Change the title page to look a bit better, and fit in with the fncychap
+% ``Bjarne'' style a bit better.
+%
+\renewcommand{\maketitle}{%
+ \noindent\rule{\textwidth}{1pt}\par
+ \begingroup % for PDF information dictionary
+ \def\endgraf{ }\def\and{\& }%
+ \pdfstringdefDisableCommands{\def\\{, }}% overwrite hyperref setup
+ \hypersetup{pdfauthor={\@author}, pdftitle={\@title}}%
+ \endgroup
+ \begin{flushright}
+ \sphinxlogo
+ \py@HeaderFamily
+ {\Huge \@title }\par
+ {\itshape\large \py@release \releaseinfo}\par
+ \vspace{25pt}
+ {\Large
+ \begin{tabular}[t]{c}
+ \@author
+ \end{tabular}}\par
+ \vspace{25pt}
+ \@date \par
+ \py@authoraddress \par
+ \end{flushright}
+ \@thanks
+ \setcounter{footnote}{0}
+ \let\thanks\relax\let\maketitle\relax
+ %\gdef\@thanks{}\gdef\@author{}\gdef\@title{}
+}
+
+\newcommand{\sphinxtableofcontents}{
+ \begingroup
+ \parskip = 0mm
+ \tableofcontents
+ \endgroup
+ \rule{\textwidth}{1pt}
+ \vspace{12pt}
+}
+
+\@ifundefined{fancyhf}{
+ \pagestyle{plain}}{
+ \pagestyle{normal}} % start this way; change for
+\pagenumbering{arabic} % ToC & chapters
+
+\thispagestyle{empty}
+
+% Fix the bibliography environment to add an entry to the Table of
+% Contents.
+% For an article document class this environment is a section,
+% so no page break before it.
+%
+\newenvironment{sphinxthebibliography}[1]{%
+ % \phantomsection % not needed here since TeXLive 2010's hyperref
+ \begin{thebibliography}{1}%
+ \addcontentsline{toc}{section}{\ifdefined\refname\refname\else\ifdefined\bibname\bibname\fi\fi}}{\end{thebibliography}}
+
+
+% Same for the indices.
+% The memoir class already does this, so we don't duplicate it in that case.
+%
+\@ifclassloaded{memoir}
+ {\newenvironment{sphinxtheindex}{\begin{theindex}}{\end{theindex}}}
+ {\newenvironment{sphinxtheindex}{%
+ \phantomsection % needed because no chapter, section, ... is created by theindex
+ \begin{theindex}%
+ \addcontentsline{toc}{section}{\indexname}}{\end{theindex}}}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/sphinxmanual.cls Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,114 @@
+%
+% sphinxmanual.cls for Sphinx (http://sphinx-doc.org/)
+%
+
+\NeedsTeXFormat{LaTeX2e}[1995/12/01]
+\ProvidesClass{sphinxmanual}[2017/03/26 v1.6 Document class (Sphinx manual)]
+
+% chapters starting at odd pages (overridden by 'openany' document option)
+\PassOptionsToClass{openright}{\sphinxdocclass}
+
+% 'oneside' option overriding the 'twoside' default
+\newif\if@oneside
+\DeclareOption{oneside}{\@onesidetrue}
+% Pass remaining document options to the parent class.
+\DeclareOption*{\PassOptionsToClass{\CurrentOption}{\sphinxdocclass}}
+\ProcessOptions\relax
+
+% Defaults two-side document
+\if@oneside
+% nothing to do (oneside is the default)
+\else
+\PassOptionsToClass{twoside}{\sphinxdocclass}
+\fi
+
+\LoadClass{\sphinxdocclass}
+
+% Set some sane defaults for section numbering depth and TOC depth. You can
+% reset these counters in your preamble.
+%
+\setcounter{secnumdepth}{2}
+\setcounter{tocdepth}{1}
+
+% Change the title page to look a bit better, and fit in with the fncychap
+% ``Bjarne'' style a bit better.
+%
+\renewcommand{\maketitle}{%
+ \let\spx@tempa\relax
+ \ifHy@pageanchor\def\spx@tempa{\Hy@pageanchortrue}\fi
+ \hypersetup{pageanchor=false}% avoid duplicate destination warnings
+ \begin{titlepage}%
+ \let\footnotesize\small
+ \let\footnoterule\relax
+ \noindent\rule{\textwidth}{1pt}\par
+ \begingroup % for PDF information dictionary
+ \def\endgraf{ }\def\and{\& }%
+ \pdfstringdefDisableCommands{\def\\{, }}% overwrite hyperref setup
+ \hypersetup{pdfauthor={\@author}, pdftitle={\@title}}%
+ \endgroup
+ \begin{flushright}%
+ \sphinxlogo
+ \py@HeaderFamily
+ {\Huge \@title \par}
+ {\itshape\LARGE \py@release\releaseinfo \par}
+ \vfill
+ {\LARGE
+ \begin{tabular}[t]{c}
+ \@author
+ \end{tabular}
+ \par}
+ \vfill\vfill
+ {\large
+ \@date \par
+ \vfill
+ \py@authoraddress \par
+ }%
+ \end{flushright}%\par
+ \@thanks
+ \end{titlepage}%
+ \setcounter{footnote}{0}%
+ \let\thanks\relax\let\maketitle\relax
+ %\gdef\@thanks{}\gdef\@author{}\gdef\@title{}
+ \if@openright\cleardoublepage\else\clearpage\fi
+ \spx@tempa
+}
+
+\newcommand{\sphinxtableofcontents}{%
+ \pagenumbering{roman}%
+ \pagestyle{plain}%
+ \begingroup
+ \parskip \z@skip
+ \tableofcontents
+ \endgroup
+ % before resetting page counter, let's do the right thing.
+ \if@openright\cleardoublepage\else\clearpage\fi
+ \pagenumbering{arabic}%
+ \ifdefined\fancyhf\pagestyle{normal}\fi
+}
+
+% This is needed to get the width of the section # area wide enough in the
+% library reference. Doing it here keeps it the same for all the manuals.
+%
+\renewcommand*\l@section{\@dottedtocline{1}{1.5em}{2.6em}}
+\renewcommand*\l@subsection{\@dottedtocline{2}{4.1em}{3.5em}}
+
+% Fix the bibliography environment to add an entry to the Table of
+% Contents.
+% For a report document class this environment is a chapter.
+%
+\newenvironment{sphinxthebibliography}[1]{%
+ \if@openright\cleardoublepage\else\clearpage\fi
+ % \phantomsection % not needed here since TeXLive 2010's hyperref
+ \begin{thebibliography}{1}%
+ \addcontentsline{toc}{chapter}{\bibname}}{\end{thebibliography}}
+
+% Same for the indices.
+% The memoir class already does this, so we don't duplicate it in that case.
+%
+\@ifclassloaded{memoir}
+ {\newenvironment{sphinxtheindex}{\begin{theindex}}{\end{theindex}}}
+ {\newenvironment{sphinxtheindex}{%
+ \if@openright\cleardoublepage\else\clearpage\fi
+ \phantomsection % needed as no chapter, section, ... created
+ \begin{theindex}%
+ \addcontentsline{toc}{chapter}{\indexname}}{\end{theindex}}}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/_build/latex/sphinxmulticell.sty Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,317 @@
+\NeedsTeXFormat{LaTeX2e}
+\ProvidesPackage{sphinxmulticell}%
+ [2017/02/23 v1.6 better span rows and columns of a table (Sphinx team)]%
+\DeclareOption*{\PackageWarning{sphinxmulticell}{Option `\CurrentOption' is unknown}}%
+\ProcessOptions\relax
+%
+% --- MULTICOLUMN ---
+% standard LaTeX's \multicolumn
+% 1. does not allow verbatim contents,
+% 2. interacts very poorly with tabulary.
+%
+% It is needed to write own macros for Sphinx: to allow code-blocks in merged
+% cells rendered by tabular/longtable, and to allow multi-column cells with
+% paragraphs to be taken into account sanely by tabulary algorithm for column
+% widths.
+%
+% This requires quite a bit of hacking. First, in Sphinx, the multi-column
+% contents will *always* be wrapped in a varwidth environment. The issue
+% becomes to pass it the correct target width. We must trick tabulary into
+% believing the multicolumn is simply separate columns, else tabulary does not
+% incorporate the contents in its algorithm. But then we must clear the
+% vertical rules...
+%
+% configuration of tabulary
+\setlength{\tymin}{3\fontcharwd\font`0 }% minimal width of "squeezed" columns
+\setlength{\tymax}{10000pt}% allow enough room for paragraphs to "compete"
+% we need access to tabulary's final computed width. \@tempdima is too volatile
+% to hope it has kept tabulary's value when \sphinxcolwidth needs it.
+\newdimen\sphinx@TY@tablewidth
+\def\tabulary{%
+ \def\TY@final{\sphinx@TY@tablewidth\@tempdima\tabular}%
+ \let\endTY@final\endtabular
+ \TY@tabular}%
+% next hack is needed only if user has set latex_use_latex_multicolumn to True:
+% it fixes tabulary's bug with \multicolumn defined "short" in first pass. (if
+% upstream tabulary adds a \long, our extra one causes no harm)
+\def\sphinx@tempa #1\def\multicolumn#2#3#4#5#6#7#8#9\sphinx@tempa
+ {\def\TY@tab{#1\long\def\multicolumn####1####2####3{\multispan####1\relax}#9}}%
+\expandafter\sphinx@tempa\TY@tab\sphinx@tempa
+%
+% TN. 1: as \omit is never executed, Sphinx multicolumn does not need to worry
+% like standard multicolumn about |l| vs l|. On the other hand it assumes
+% columns are separated by a | ... (if not it will add extraneous
+% \arrayrulewidth space for each column separation in its estimate of available
+% width).
+%
+% TN. 1b: as Sphinx multicolumn uses neither \omit nor \span, it can not
+% (easily) get rid of extra macros from >{...} or <{...} between columns. At
+% least, it has been made compatible with colortbl's \columncolor.
+%
+% TN. 2: tabulary's second pass is handled like tabular/longtable's single
+% pass, with the difference that we hacked \TY@final to set in
+% \sphinx@TY@tablewidth the final target width as computed by tabulary. This is
+% needed only to handle columns with a "horizontal" specifier: "p" type columns
+% (inclusive of tabulary's LJRC) holds the target column width in the
+% \linewidth dimension.
+%
+% TN. 3: use of \begin{sphinxmulticolumn}...\end{sphinxmulticolumn} mark-up
+% would need some hacking around the fact that groups can not span across table
+% cells (the code does inserts & tokens, see TN1b). It was decided to keep it
+% simple with \sphinxstartmulticolumn...\sphinxstopmulticolumn.
+%
+% MEMO about nesting: if sphinxmulticolumn is encountered in a nested tabular
+% inside a tabulary it will think to be at top level in the tabulary. But
+% Sphinx generates no nested tables, and if some LaTeX macro uses internally a
+% tabular this will not have a \sphinxstartmulticolumn within it!
+%
+\def\sphinxstartmulticolumn{%
+ \ifx\equation$% $ tabulary's first pass
+ \expandafter\sphinx@TYI@start@multicolumn
+ \else % either not tabulary or tabulary's second pass
+ \expandafter\sphinx@start@multicolumn
+ \fi
+}%
+\def\sphinxstopmulticolumn{%
+ \ifx\equation$% $ tabulary's first pass
+ \expandafter\sphinx@TYI@stop@multicolumn
+ \else % either not tabulary or tabulary's second pass
+ \ignorespaces
+ \fi
+}%
+\def\sphinx@TYI@start@multicolumn#1{%
+ % use \gdef always to avoid stack space build up
+ \gdef\sphinx@tempa{#1}\begingroup\setbox\z@\hbox\bgroup
+}%
+\def\sphinx@TYI@stop@multicolumn{\egroup % varwidth was used with \tymax
+ \xdef\sphinx@tempb{\the\dimexpr\wd\z@/\sphinx@tempa}% per column width
+ \endgroup
+ \expandafter\sphinx@TYI@multispan\expandafter{\sphinx@tempa}%
+}%
+\def\sphinx@TYI@multispan #1{%
+ \kern\sphinx@tempb\ignorespaces % the per column occupied width
+ \ifnum#1>\@ne % repeat, taking into account subtleties of TeX's & ...
+ \expandafter\sphinx@TYI@multispan@next\expandafter{\the\numexpr#1-\@ne\expandafter}%
+ \fi
+}%
+\def\sphinx@TYI@multispan@next{&\relax\sphinx@TYI@multispan}%
+%
+% Now the branch handling either the second pass of tabulary or the single pass
+% of tabular/longtable. This is the delicate part where we gather the
+% dimensions from the p columns either set-up by tabulary or by user p column
+% or Sphinx \X, \Y columns. The difficulty is that to get the said width, the
+% template must be inserted (other hacks would be horribly complicated except
+% if we rewrote crucial parts of LaTeX's \@array !) and we can not do
+% \omit\span like standard \multicolumn's easy approach. Thus we must cancel
+% the \vrule separators. Also, perhaps the column specifier is of the l, c, r
+% type, then we attempt an ad hoc rescue to give varwidth a reasonable target
+% width.
+\def\sphinx@start@multicolumn#1{%
+ \gdef\sphinx@multiwidth{0pt}\gdef\sphinx@tempa{#1}\sphinx@multispan{#1}%
+}%
+\def\sphinx@multispan #1{%
+ \ifnum#1=\@ne\expandafter\sphinx@multispan@end
+ \else\expandafter\sphinx@multispan@next
+ \fi {#1}%
+}%
+\def\sphinx@multispan@next #1{%
+ % trick to recognize L, C, R, J or p, m, b type columns
+ \ifdim\baselineskip>\z@
+ \gdef\sphinx@tempb{\linewidth}%
+ \else
+ % if in an l, r, c type column, try and hope for the best
+ \xdef\sphinx@tempb{\the\dimexpr(\ifx\TY@final\@undefined\linewidth\else
+ \sphinx@TY@tablewidth\fi-\arrayrulewidth)/\sphinx@tempa
+ -\tw@\tabcolsep-\arrayrulewidth\relax}%
+ \fi
+ \noindent\kern\sphinx@tempb\relax
+ \xdef\sphinx@multiwidth
+ {\the\dimexpr\sphinx@multiwidth+\sphinx@tempb+\tw@\tabcolsep+\arrayrulewidth}%
+ % hack the \vline and the colortbl macros
+ \sphinx@hack@vline\sphinx@hack@CT&\relax
+ % repeat
+ \expandafter\sphinx@multispan\expandafter{\the\numexpr#1-\@ne}%
+}%
+% packages like colortbl add group levels, we need to "climb back up" to be
+% able to hack the \vline and also the colortbl inserted tokens. This creates
+% empty space whether or not the columns were | separated:
+\def\sphinx@hack@vline{\ifnum\currentgrouptype=6\relax
+ \kern\arrayrulewidth\arrayrulewidth\z@\else\aftergroup\sphinx@hack@vline\fi}%
+\def\sphinx@hack@CT{\ifnum\currentgrouptype=6\relax
+ \let\CT@setup\sphinx@CT@setup\else\aftergroup\sphinx@hack@CT\fi}%
+% It turns out \CT@row@color is not expanded contrarily to \CT@column@color
+% during LaTeX+colortbl preamble preparation, hence it would be possible for
+% \sphinx@CT@setup to discard only the column color and choose to obey or not
+% row color and cell color. It would even be possible to propagate cell color
+% to row color for the duration of the Sphinx multicolumn... the (provisional?)
+% choice has been made to cancel the colortbl colours for the multicolumn
+% duration.
+\def\sphinx@CT@setup #1\endgroup{\endgroup}% hack to remove colour commands
+\def\sphinx@multispan@end#1{%
+ % first, trace back our steps horizontally
+ \noindent\kern-\dimexpr\sphinx@multiwidth\relax
+ % and now we set the final computed width for the varwidth environment
+ \ifdim\baselineskip>\z@
+ \xdef\sphinx@multiwidth{\the\dimexpr\sphinx@multiwidth+\linewidth}%
+ \else
+ \xdef\sphinx@multiwidth{\the\dimexpr\sphinx@multiwidth+
+ (\ifx\TY@final\@undefined\linewidth\else
+ \sphinx@TY@tablewidth\fi-\arrayrulewidth)/\sphinx@tempa
+ -\tw@\tabcolsep-\arrayrulewidth\relax}%
+ \fi
+ % we need to remove colour set-up also for last cell of the multi-column
+ \aftergroup\sphinx@hack@CT
+}%
+\newcommand*\sphinxcolwidth[2]{%
+ % this dimension will always be used for varwidth, and serves as maximum
+ % width when cells are merged either via multirow or multicolumn or both,
+ % as always their contents is wrapped in varwidth environment.
+ \ifnum#1>\@ne % multi-column (and possibly also multi-row)
+ % we wrote our own multicolumn code especially to handle that (and allow
+ % verbatim contents)
+ \ifx\equation$%$
+ \tymax % first pass of tabulary (cf MEMO above regarding nesting)
+ \else % the \@gobble thing is for compatibility with standard \multicolumn
+ \sphinx@multiwidth\@gobble{#1/#2}%
+ \fi
+ \else % single column multirow
+ \ifx\TY@final\@undefined % not a tabulary.
+ \ifdim\baselineskip>\z@
+ % in a p{..} type column, \linewidth is the target box width
+ \linewidth
+ \else
+ % l, c, r columns. Do our best.
+ \dimexpr(\linewidth-\arrayrulewidth)/#2-
+ \tw@\tabcolsep-\arrayrulewidth\relax
+ \fi
+ \else % in tabulary
+ \ifx\equation$%$% first pass
+ \tymax % it is set to a big value so that paragraphs can express themselves
+ \else
+ % second pass.
+ \ifdim\baselineskip>\z@
+ \linewidth % in a L, R, C, J column or a p, \X, \Y ...
+ \else
+ % we have hacked \TY@final to put in \sphinx@TY@tablewidth the table width
+ \dimexpr(\sphinx@TY@tablewidth-\arrayrulewidth)/#2-
+ \tw@\tabcolsep-\arrayrulewidth\relax
+ \fi
+ \fi
+ \fi
+ \fi
+}%
+% fallback default in case user has set latex_use_latex_multicolumn to True:
+% \sphinxcolwidth will use this only inside LaTeX's standard \multicolumn
+\def\sphinx@multiwidth #1#2{\dimexpr % #1 to gobble the \@gobble (!)
+ (\ifx\TY@final\@undefined\linewidth\else\sphinx@TY@tablewidth\fi
+ -\arrayrulewidth)*#2-\tw@\tabcolsep-\arrayrulewidth\relax}%
+%
+% --- MULTIROW ---
+% standard \multirow
+% 1. does not allow verbatim contents,
+% 2. does not allow blank lines in its argument,
+% 3. its * specifier means to typeset "horizontally" which is very
+% bad for paragraph content. 2016 version has = specifier but it
+% must be used with p type columns only, else results are bad,
+% 4. it requires manual intervention if the contents is too long to fit
+% in the asked-for number of rows.
+% 5. colour panels (either from \rowcolor or \columncolor) will hide
+% the bottom part of multirow text, hence manual tuning is needed
+% to put the multirow insertion at the _bottom_.
+%
+% The Sphinx solution consists in always having contents wrapped
+% in a varwidth environment so that it makes sense to estimate how many
+% lines it will occupy, and then ensure by insertion of suitable struts
+% that the table rows have the needed height. The needed mark-up is done
+% by LaTeX writer, which has its own id for the merged cells.
+%
+% The colour issue is solved by clearing colour panels in all cells,
+% whether or not the multirow is single-column or multi-column.
+%
+% In passing we obtain baseline alignements across rows (only if
+% \arraylinestretch is 1, as LaTeX's does not obey \arraylinestretch in "p"
+% multi-line contents, only first and last line...)
+%
+% TODO: examine the situation with \arraylinestretch > 1. The \extrarowheight
+% is hopeless for multirow anyhow, it makes baseline alignment strictly
+% impossible.
+\newcommand\sphinxmultirow[2]{\begingroup
+ % #1 = nb of spanned rows, #2 = Sphinx id of "cell", #3 = contents
+ % but let's fetch #3 in a way allowing verbatim contents !
+ \def\sphinx@nbofrows{#1}\def\sphinx@cellid{#2}%
+ \afterassignment\sphinx@multirow\let\next=
+}%
+\def\sphinx@multirow {%
+ \setbox\z@\hbox\bgroup\aftergroup\sphinx@@multirow\strut
+}%
+\def\sphinx@@multirow {%
+ % The contents, which is a varwidth environment, has been captured in
+ % \box0 (a \hbox).
+ % We have with \sphinx@cellid an assigned unique id. The goal is to give
+ % about the same height to all the involved rows.
+ % For this Sphinx will insert a \sphinxtablestrut{cell_id} mark-up
+ % in LaTeX file and the expansion of the latter will do the suitable thing.
+ \dimen@\dp\z@
+ \dimen\tw@\ht\@arstrutbox
+ \advance\dimen@\dimen\tw@
+ \advance\dimen\tw@\dp\@arstrutbox
+ \count@=\dimen@ % type conversion dim -> int
+ \count\tw@=\dimen\tw@
+ \divide\count@\count\tw@ % TeX division truncates
+ \advance\dimen@-\count@\dimen\tw@
+ % 1300sp is about 0.02pt. For comparison a rule default width is 0.4pt.
+ % (note that if \count@ holds 0, surely \dimen@>1300sp)
+ \ifdim\dimen@>1300sp \advance\count@\@ne \fi
+ % now \count@ holds the count L of needed "lines"
+ % and \sphinx@nbofrows holds the number N of rows
+ % we have L >= 1 and N >= 1
+ % if L is a multiple of N, ... clear what to do !
+ % else write L = qN + r, 1 <= r < N and we will
+ % arrange for each row to have enough space for:
+ % q+1 "lines" in each of the first r rows
+ % q "lines" in each of the (N-r) bottom rows
+ % for a total of (q+1) * r + q * (N-r) = q * N + r = L
+ % It is possible that q == 0.
+ \count\tw@\count@
+ % the TeX division truncates
+ \divide\count\tw@\sphinx@nbofrows\relax
+ \count4\count\tw@ % q
+ \multiply\count\tw@\sphinx@nbofrows\relax
+ \advance\count@-\count\tw@ % r
+ \expandafter\xdef\csname sphinx@tablestrut_\sphinx@cellid\endcsname
+ {\noexpand\sphinx@tablestrut{\the\count4}{\the\count@}{\sphinx@cellid}}%
+ \dp\z@\z@
+ % this will use the real height if it is >\ht\@arstrutbox
+ \sphinxtablestrut{\sphinx@cellid}\box\z@
+ \endgroup % group was opened in \sphinxmultirow
+}%
+\newcommand*\sphinxtablestrut[1]{%
+ % #1 is a "cell_id", i.e. the id of a merged group of table cells
+ \csname sphinx@tablestrut_#1\endcsname
+}%
+% LaTeX typesets the table row by row, hence each execution can do
+% an update for the next row.
+\newcommand*\sphinx@tablestrut[3]{\begingroup
+ % #1 = q, #2 = (initially) r, #3 = cell_id, q+1 lines in first r rows
+ % if #2 = 0, create space for max(q,1) table lines
+ % if #2 > 0, create space for q+1 lines and decrement #2
+ \leavevmode
+ \count@#1\relax
+ \ifnum#2=\z@
+ \ifnum\count@=\z@\count@\@ne\fi
+ \else
+ % next row will be with a #2 decremented by one
+ \expandafter\xdef\csname sphinx@tablestrut_#3\endcsname
+ {\noexpand\sphinx@tablestrut{#1}{\the\numexpr#2-\@ne}{#3}}%
+ \advance\count@\@ne
+ \fi
+ \vrule\@height\ht\@arstrutbox
+ \@depth\dimexpr\count@\ht\@arstrutbox+\count@\dp\@arstrutbox-\ht\@arstrutbox\relax
+ \@width\z@
+ \endgroup
+ % we need this to avoid colour panels hiding bottom parts of multirow text
+ \sphinx@hack@CT
+}%
+\endinput
+%%
+%% End of file `sphinxmulticell.sty'.
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/conf.py Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,178 @@
+# -*- coding: utf-8 -*-
+#
+# elog2labfolder documentation build configuration file, created by
+# sphinx-quickstart on Mon Jan 8 16:34:32 2018.
+#
+# This file is execfile()d with the current directory set to its
+# containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+#
+# import os
+# import sys
+# sys.path.insert(0, os.path.abspath('.'))
+
+
+# -- General configuration ------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#
+# needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
+# ones.
+extensions = ['sphinx.ext.autodoc',
+ 'sphinx.ext.doctest',
+ 'sphinx.ext.intersphinx',
+ 'sphinx.ext.todo',
+ 'sphinx.ext.coverage',
+ 'sphinx.ext.mathjax',
+ 'sphinx.ext.viewcode',
+ 'sphinx.ext.githubpages']
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix(es) of source filenames.
+# You can specify multiple suffix as a list of string:
+#
+# source_suffix = ['.rst', '.md']
+source_suffix = '.rst'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'Labfolder at FHI'
+copyright = u'2018, Stefan Weiher'
+author = u'Stefan Weiher'
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+version = u'1.0'
+# The full version, including alpha/beta/rc tags.
+release = u'1.0'
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#
+# This is also used if you do content translation via gettext catalogs.
+# Usually you set "language" from the command line for these cases.
+language = None
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This patterns also effect to html_static_path and html_extra_path
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# If true, `todo` and `todoList` produce output, else they produce nothing.
+todo_include_todos = True
+
+
+# -- Options for HTML output ----------------------------------------------
+
+# The theme to use for HTML and HTML Help pages. See the documentation for
+# a list of builtin themes.
+#
+html_theme = 'alabaster'
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further. For a list of options available for each theme, see the
+# documentation.
+#
+# html_theme_options = {}
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+# Custom sidebar templates, must be a dictionary that maps document names
+# to template names.
+#
+# This is required for the alabaster theme
+# refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars
+html_sidebars = {
+ '**': [
+ 'relations.html', # needs 'show_related': True theme option to display
+ 'searchbox.html',
+ ]
+}
+
+
+# -- Options for HTMLHelp output ------------------------------------------
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'elog2labfolderdoc'
+
+
+# -- Options for LaTeX output ---------------------------------------------
+
+latex_elements = {
+ # The paper size ('letterpaper' or 'a4paper').
+ #
+ # 'papersize': 'letterpaper',
+
+ # The font size ('10pt', '11pt' or '12pt').
+ #
+ # 'pointsize': '10pt',
+
+ # Additional stuff for the LaTeX preamble.
+ #
+ # 'preamble': '',
+
+ # Latex figure (float) alignment
+ #
+ # 'figure_align': 'htbp',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title,
+# author, documentclass [howto, manual, or own class]).
+latex_documents = [
+ (master_doc, 'elog2labfolder.tex', u'Labfolder at FHI Documentation',
+ u'Stefan Weiher', 'manual'),
+]
+
+
+# -- Options for manual page output ---------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+ (master_doc, 'elog2labfolder', u'elog2labfolder Documentation',
+ [author], 1)
+]
+
+
+# -- Options for Texinfo output -------------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+# dir menu entry, description, category)
+texinfo_documents = [
+ (master_doc, 'elog2labfolder', u'elog2labfolder Documentation',
+ author, 'elog2labfolder', 'One line description of project.',
+ 'Miscellaneous'),
+]
+
+
+
+
+# Example configuration for intersphinx: refer to the Python standard library.
+intersphinx_mapping = {'https://docs.python.org/': None}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/conf.py~ Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,178 @@
+# -*- coding: utf-8 -*-
+#
+# elog2labfolder documentation build configuration file, created by
+# sphinx-quickstart on Mon Jan 8 16:34:32 2018.
+#
+# This file is execfile()d with the current directory set to its
+# containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+#
+# import os
+# import sys
+# sys.path.insert(0, os.path.abspath('.'))
+
+
+# -- General configuration ------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#
+# needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
+# ones.
+extensions = ['sphinx.ext.autodoc',
+ 'sphinx.ext.doctest',
+ 'sphinx.ext.intersphinx',
+ 'sphinx.ext.todo',
+ 'sphinx.ext.coverage',
+ 'sphinx.ext.mathjax',
+ 'sphinx.ext.viewcode',
+ 'sphinx.ext.githubpages']
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix(es) of source filenames.
+# You can specify multiple suffix as a list of string:
+#
+# source_suffix = ['.rst', '.md']
+source_suffix = '.rst'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'Labfolder am FHI'
+copyright = u'2018, Stefan Weiher'
+author = u'Stefan Weiher'
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+version = u'1.0'
+# The full version, including alpha/beta/rc tags.
+release = u'1.0'
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#
+# This is also used if you do content translation via gettext catalogs.
+# Usually you set "language" from the command line for these cases.
+language = None
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This patterns also effect to html_static_path and html_extra_path
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# If true, `todo` and `todoList` produce output, else they produce nothing.
+todo_include_todos = True
+
+
+# -- Options for HTML output ----------------------------------------------
+
+# The theme to use for HTML and HTML Help pages. See the documentation for
+# a list of builtin themes.
+#
+html_theme = 'alabaster'
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further. For a list of options available for each theme, see the
+# documentation.
+#
+# html_theme_options = {}
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+# Custom sidebar templates, must be a dictionary that maps document names
+# to template names.
+#
+# This is required for the alabaster theme
+# refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars
+html_sidebars = {
+ '**': [
+ 'relations.html', # needs 'show_related': True theme option to display
+ 'searchbox.html',
+ ]
+}
+
+
+# -- Options for HTMLHelp output ------------------------------------------
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'elog2labfolderdoc'
+
+
+# -- Options for LaTeX output ---------------------------------------------
+
+latex_elements = {
+ # The paper size ('letterpaper' or 'a4paper').
+ #
+ # 'papersize': 'letterpaper',
+
+ # The font size ('10pt', '11pt' or '12pt').
+ #
+ # 'pointsize': '10pt',
+
+ # Additional stuff for the LaTeX preamble.
+ #
+ # 'preamble': '',
+
+ # Latex figure (float) alignment
+ #
+ # 'figure_align': 'htbp',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title,
+# author, documentclass [howto, manual, or own class]).
+latex_documents = [
+ (master_doc, 'elog2labfolder.tex', u'elog2labfolder Documentation',
+ u'Stefan Weiher', 'manual'),
+]
+
+
+# -- Options for manual page output ---------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+ (master_doc, 'elog2labfolder', u'elog2labfolder Documentation',
+ [author], 1)
+]
+
+
+# -- Options for Texinfo output -------------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+# dir menu entry, description, category)
+texinfo_documents = [
+ (master_doc, 'elog2labfolder', u'elog2labfolder Documentation',
+ author, 'elog2labfolder', 'One line description of project.',
+ 'Miscellaneous'),
+]
+
+
+
+
+# Example configuration for intersphinx: refer to the Python standard library.
+intersphinx_mapping = {'https://docs.python.org/': None}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/groups.rst Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,38 @@
+Groups, ownership and sharing in labfolder
+==========================================
+As labfolder user you can create groups (ultimately: group projects) and private projects. In *Manage > Projects* you see all projects that you own and that you are a member of.
+
+Private projects
+----------------
+You alone are the owner of these projects in *My Private Projects*. Their ownership cannot be transfered from you to anyone else via the webinterface. Only via directly manipulating the database the ownership can be changed to an active user.
+
+.. image:: _static/private_projects.png
+ :width: 70 %
+ :align: center
+
+
+Group projects
+--------------
+Any labfolder user can create groups and subgroups in *Manage > Groups > Button "+Add"*. Within (sub)groups you can create group projects of which you are the administrator (admin). In the role of the admin you can do the following:
+
+* invite users to your (sub)group via e-mail
+* move users between subgroups
+* set and remove (sub)group members as admins
+* remove users from a (sub)group e.g. when they are leaving the institute (**In this case the ownership of this user's projects within the (sub)group needs to be transfered first!**)
+* delete (sub)groups (before deleting it you need to remove all group members)
+
+
+Group settings
+--------------
+Administrators of groups (but not the ones of the subgroups) can edit the general settings of groups.
+
+.. image:: _static/group_settings.png
+ :width: 70 %
+ :align: center
+
+* Through the option *Prevent group members from deleting content* all users (including the admin) are prevented from deleting projects or any other data from the labfolder database. Projects will merely be hidden if a user decides to *Remove* it from their list of projects.
+
+* By checking the option *Prevent group members from having private projects*, group members will not be allowed to have private projects. All private projects of group members will be moved into the group projects, but will not be shared with any other group members.
+
+* By switching on *Users can be members of several subgroups*, users which are already members of a group can be invited again to another subgroup within the group. If switched to off members cannot be invited to subgroups of their current group.
+
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/import_export.rst Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,37 @@
+Import and export of projects and entries
+=========================================
+
+Import
+------
+
+The import of projects (from another labfolder instance or from another logbook software) is only possible via the labfolder API. An import of labfolder-own projects via webinterface is not possible to date. You can find the API documentation here:
+
+| Version 1: http://labfolder.rz-berlin.mpg.de:9091/api/v1
+| Version 2: https://labfolder.rz-berlin.mpg.de/api/v2/docs/development.html
+
+Version 2 is still in the development phase.
+
+Export
+------
+Exporting projects (or just single entries) is possible in three different formats: PDF, XHTML and JSON. The export as PDF can be done from within a project ...
+
+.. image:: _static/export_of_projects.png
+ :width: 70 %
+ :align: center
+
+... or from the project overview (*Manage > Projects*):
+
+.. image:: _static/export_of_projects2.png
+ :width: 70 %
+ :align: center
+
+The XHTML export can be done via the settings:
+
+.. image:: _static/export_xhtml.png
+ :width: 70 %
+ :align: center
+
+However, to use this type of export it has to be installed first in the *Manage > Apps* section. By means of the XHTML export all projects that one owns will be exported. A detailled selection of projects or entries to be exported is not possible. As soon as the export process is finished a download link appears in the settings in *Data exports*. The downloadable ZIP file contains all images and files along with an index.html file that contains information about all entries. You could open and view the index.html file in a browser similar to the view in labfolder.
+
+The JSON export is only useable via the API endpoint ``GET /entries``. However, at the moment the response only contains useful information such as dates and tags. The author name is hidden behind the author ID and the entry text content is completely missing.
+
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/import_export.rst~ Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,37 @@
+Import and export of projects and entries
+=========================================
+
+Import
+------
+
+The import of projects (from another labfolder instance or from another logbook software) is only possible via the labfolder API. An import of labfolder-own projects via webinterface is not possible to date. You can find the API documentation here:
+
+| Version 1: http://labfolder.rz-berlin.mpg.de:9091/api/v1
+| Version 2: https://labfolder.rz-berlin.mpg.de/api/v2/docs/development.html
+
+Version 2 is still under way.
+
+Export
+------
+Exporting projects (or just single entries) is possible in three different formats: PDF, XHTML and JSON. The export as PDF can be done from within a project ...
+
+.. image:: _static/export_of_projects.png
+ :width: 70 %
+ :align: center
+
+... or from the project overview (*Manage > Projects*):
+
+.. image:: _static/export_of_projects2.png
+ :width: 70 %
+ :align: center
+
+The XHTML export can be done via the settings:
+
+.. image:: _static/export_xhtml.png
+ :width: 70 %
+ :align: center
+
+However, to use this type of export it has to be installed first in the *Manage > Apps* section. By means of the XHTML export all projects that one owns will be exported. A detailled selection of projects or entries to be exported is not possible. As soon as the export process is finished a download link appears in the settings in *Data exports*. The downloadable ZIP file contains all images and files along with an index.html file that contains information about all entries. You could open and view the index.html file in a browser similar to the view in labfolder.
+
+The JSON export is only useable via the API endpoint ``GET /entries``. However, at the moment the response only contains useful information such as dates and tags. The author name is hidden behind the author ID and the entry text content is completely missing.
+
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/importing_from_elog.rst Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,40 @@
+Importing projects from e.g. the ELOGbook to Labfolder at the FHI
+=================================================================
+
+The ELOG entries of a certain project need to be exported as *Raw* which looks like this::
+
+ $@MID@$: 12
+ Date: Tue, 03 Dec 2013 12:15:14 +0100
+ Author: Wieland Schöllkopf
+ Author Email: mailto:wschoell@fhi-berlin.mpg.de
+ Category: Shift summary
+ Subject: 1st solid-state experiment with FHI FEL
+ Severity: DOCU
+ Keywords:
+ Record date: 1386069171
+ Attachment:
+ Encoding: HTML
+ ========================================
+ <p>Today Alex Paarmann and Marc Herzog are measuring in the wavelength range from 10 to 20 micron with a 0.5 mm thick GGG (Gadolinium Gallium Garnet, <a title="Gadolinium" href="http://en.wikipedia.org/wiki/Gadolinium">Gd</a><sub>3</sub><a title="Gallium" href="http://en.wikipedia.org/wiki/Gallium">Ga</a><sub>5</sub><a title="Oxygen" href="http://en.wikipedia.org/wiki/Oxygen">O</a><sub>12</sub>). Electron energy is set to 26 MeV.</p>
+
+This ASCII export looks like this in the ELOG webinterface:
+
+.. image:: _static/elog_entry.png
+ :width: 100 %
+ :align: center
+
+What is noticeable is that the ELOG export comes with a "ö" instead of an "ö". Interestingly, if only entries done by Wieland are exported the export file has UTF-8 encoding which can actually print German "Umlaute" (ö, ä, ü). If all entries are exported the encoding changes to an encoding that cannot handle e.g. "ö".
+
+After importing the above ELOG entry into labfolder this entry appears like that:
+
+.. image:: _static/entry_after_import.png
+ :width: 100 %
+ :align: center
+
+
+
+
+
+
+
+
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/importing_from_elog.rst~ Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,35 @@
+Importing projects from e.g. the ELOGbook to Labfolder at the FHI
+=================================================================
+
+The ELOG entries of a certain project need to be exported as *Raw* which looks like this::
+
+ $@MID@$: 12
+ Date: Tue, 03 Dec 2013 12:15:14 +0100
+ Author: Wieland Schöllkopf
+ Author Email: mailto:wschoell@fhi-berlin.mpg.de
+ Category: Shift summary
+ Subject: 1st solid-state experiment with FHI FEL
+ Severity: DOCU
+ Keywords:
+ Record date: 1386069171
+ Attachment:
+ Encoding: HTML
+ ========================================
+ <p>Today Alex Paarmann and Marc Herzog are measuring in the wavelength range from 10 to 20 micron with a 0.5 mm thick GGG (Gadolinium Gallium Garnet, <a title="Gadolinium" href="http://en.wikipedia.org/wiki/Gadolinium">Gd</a><sub>3</sub><a title="Gallium" href="http://en.wikipedia.org/wiki/Gallium">Ga</a><sub>5</sub><a title="Oxygen" href="http://en.wikipedia.org/wiki/Oxygen">O</a><sub>12</sub>). Electron energy is set to 26 MeV.</p>
+
+This ASCII export looks like this in the ELOG webinterface:
+
+.. image:: _static/elog_entry.png
+ :width: 100 %
+ :align: center
+
+What is noticeable is that the ELOG export comes with a "ö" instead of an "ö". Interestingly, if only entries done by Wieland are exported the export file has UTF-8 encoding which can actually print German "Umlaute" (ö, ä, ü). If all entries are exported the encoding changes to an encoding that cannot handle e.g. "ö".
+
+
+
+
+
+
+
+
+
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/index.rst Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,44 @@
+.. elog2labfolder documentation master file, created by
+ sphinx-quickstart on Mon Jan 8 16:34:32 2018.
+ You can adapt this file completely to your liking, but it should at least
+ contain the root `toctree` directive.
+
+Welcome to elog2labfolder's documentation!
+==========================================
+
+.. toctree::
+ :maxdepth: 2
+ :caption: Contents:
+
+ installation.rst
+ groups.rst
+ import_export.rst
+ importing_from_elog.rst
+
+..
+ elog2labfolder.py
+
+ Installation von Cups
+
+ Funktion und Nutzung der labfolder-APIs
+
+ Mit welcher API funktioniert was?
+ Generell nicht möglich mit den APIs: Ändern der User-ID und des Timestamps
+
+ Was sind die Probleme, die uns derzeit an der Umstellung hindern bzw. die uns langfristig gesehen skeptisch machen, ob Labfolder wirklich geeignet ist?
+
+ Import/Export von Projekten
+ Aufspalten der Labfolder-Instanz auf zwei oder drei Instanzen (Sharding?)
+
+ Was noch zu klären ist:
+
+ Darstellung von Umlauten im elog-Export
+ Darstellung von Text in PDFs im labfolder-PDF-Viewer (labfolder weiß Bescheid)
+
+ Informationen aus meiner E-Mail an Heinz vom 15.12. hinzufügen
+
+ Versuch einer REST-API
+
+
+
+
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/index.rst~ Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,44 @@
+.. elog2labfolder documentation master file, created by
+ sphinx-quickstart on Mon Jan 8 16:34:32 2018.
+ You can adapt this file completely to your liking, but it should at least
+ contain the root `toctree` directive.
+
+Welcome to elog2labfolder's documentation!
+==========================================
+
+.. toctree::
+ :maxdepth: 2
+ :caption: Contents:
+
+ instaation.rst
+ groups.rst
+ import_export.rst
+ importing_from_elog.rst
+
+..
+ elog2labfolder.py
+
+ Installation von Cups
+
+ Funktion und Nutzung der labfolder-APIs
+
+ Mit welcher API funktioniert was?
+ Generell nicht möglich mit den APIs: Ändern der User-ID und des Timestamps
+
+ Was sind die Probleme, die uns derzeit an der Umstellung hindern bzw. die uns langfristig gesehen skeptisch machen, ob Labfolder wirklich geeignet ist?
+
+ Import/Export von Projekten
+ Aufspalten der Labfolder-Instanz auf zwei oder drei Instanzen (Sharding?)
+
+ Was noch zu klären ist:
+
+ Darstellung von Umlauten im elog-Export
+ Darstellung von Text in PDFs im labfolder-PDF-Viewer (labfolder weiß Bescheid)
+
+ Informationen aus meiner E-Mail an Heinz vom 15.12. hinzufügen
+
+ Versuch einer REST-API
+
+
+
+
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/installation.rst Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,122 @@
+Installation of labfolder
+=========================
+
+Labfolder is easy to install. Follow the instructions given in the *labfolder Installation Manual*. The broad steps are: **install MySQL, docker and labolder; configure labfolder via the server.cnf file**. This labfolder config file could look like this::
+
+ # Network settings
+ DEFAULT_HTTP_PROTOCOL=https://
+ DEFAULT_DOMAIN=labfolder.rz-berlin.mpg.de
+
+ # JDBC Properties
+ JDBC_SERVER_TIMEZONE=Europe/Berlin
+ JDBC_DATABASE_URL=jdbc:mysql://localhost:3306/labfolder?useUnicode=true&characterEncoding=UTF-8
+ JDBC_USERNAME=labfolder
+ JDBC_PASSWORD=fhilab
+ JDBC_SCHEMA_NAME=labfolder
+ #REMOVE_ABANDONED_TIMEOUT=60
+
+ # Mail client properties
+ MAIL_STARTTLS=false
+ MAIL_AUTHENTICATION_ENABLE=false
+ MAIL_HOST=mail.fhi-berlin.mpg.de
+ MAIL_PORT=25
+ #MAIL_USERNAME=
+ #MAIL_PASSWORD=
+ MAIL_EMAIL=ppb@fhi-berlin.mpg.de
+
+ # Server Event logging
+ LOG_TO_FILE=true
+
+ #Maximum upload file size
+ FILEUPLOAD_MAXUPLOADSIZE=25000000
+
+ # User and group control
+ DEFAULT_GROUP_SIZE=50
+ DEFAULT_GROUP_TYPE_MAXI=true
+ DEFAULT_USER_STORAGE=3221225472
+ FEATURE_GLOBAL_PREVENT_DELETE_CONTENT=false
+
+ # Terms and Privacy links
+ TERMS_OF_USE_LINK=https://www.labfolder.com/terms-external-servers/
+ PRIVACY_LINK=https://www.labfolder.com/privacy-external-servers/
+
+ # LDAP Authentication
+ FEATURE_LDAP_AUTHENTICATION=true
+ LDAP_URL=ldap://ldap.rz-berlin.mpg.de:389
+ LDAP_BASE=ou=people,dc=ppb,dc=rz-berlin,dc=mpg,dc=de
+ #LDAP_SERVER_TYPE=
+ LDAP_USER_DN=cn=pwCheck,dc=rz-berlin,dc=mpg,dc=de
+ LDAP_PASSWORD=ProstetnikVogonJeltz
+ #LDAP_ANONYMOUS_READ_ONLY=
+ LDAP_USER_DN_PATTERNS=uid={0}
+ #LDAP_IS_TLS_ENABLED=
+ #LDAP_IS_ATTRIBUTE_SEARCH_ENABLED=
+ #LDAP_ATTRIBUTE_SEARCH_NAME=
+
+ # Usage monitoring
+ ACTIVE_USER_REPORT_USE_DEFAULT_MAIL_CLIENT=true
+ CUSTOMER_IDENTIFIER='Fritz-Haber-Institut'
+
+ # Mendeley
+ FEATURE_MENDELEY=false
+ #MENDELEY_CLIENT_ID=
+ #MENDELEY_CLIENT_SECRET=
+ #MENDELEY_CLIENT_CALLBACKURL=http://localhost:9091/eln/mendeley/oauthCallback
+
+ # Dropbox
+ FEATURE_DROPBOX=false
+ #DROPBOX_CONSUMER_KEY=
+ #DROPBOX_CONSUMER_SECRET=
+
+ # Figshare
+ FEATURE_FIGSHARE=false
+
+ # XHTML Export
+ FEATURE_XHTML_EXPORT=true
+ EXPORT_DOCUMENT_REPOSITORY_TYPE=fileSystem
+
+The configuration is explained in detail in the installation manual. Now, **create the labfolder database and run labfolder** (see the manual for details). Additionally, you could install Apache and set it up as a reverse proxy in order to make labfolder only available through https. The exact steps are::
+
+ labfolder@lf:~$ sudo apt-get install build-essential
+ labfolder@lf:~$ sudo apt install apache2
+ labfolder@lf:~$ sudo a2enmod proxy proxy_ajp proxy_http rewrite deflate headers proxy_balancer proxy_connect proxy_html xml2enc
+ labfolder@lf:~$ sudo a2enmod ssl
+
+ ### Use certificates from e.g. let's encrypt. Please see below for more information.
+
+ ### create /etc/apache2/sites-available/labfolder.conf with virtual hosts for http and https:
+ labfolder@lf:~$ sudo a2ensite labfolder.conf
+ labfolder@lf:~$ sudo a2dissite 000-default.conf
+ labfolder@lf:~$ sudo service apache2 restart
+
+To get SSL certificates from letsencrypt is quite straight forward. For example this guide shows how to set up SSL certificates:
+
+https://www.digitalocean.com/community/tutorials/how-to-secure-apache-with-let-s-encrypt-on-ubuntu-16-04
+
+The Apache labfolder config file could look like this::
+
+ <VirtualHost *:80>
+ ErrorLog /var/log/apache2/error.log
+ LogLevel warn
+
+ ServerName labfolder.rz-berlin.mpg.de
+ Redirect / https://labfolder.rz-berlin.mpg.de/
+ </VirtualHost>
+
+ <VirtualHost *:443>
+ ErrorLog /var/log/apache2/error.log
+ LogLevel warn
+
+ ServerName labfolder.rz-berlin.mpg.de
+
+ SSLEngine On
+ SSLCertificateFile /etc/letsencrypt/live/labfolder.rz-berlin.mpg.de/fullchain.pem
+ SSLCertificateKeyFile /etc/letsencrypt/live/labfolder.rz-berlin.mpg.de/privkey.pem
+
+ ProxyPass / http://141.14.138.230:9091/
+ ProxyPassReverse / http://141.14.138.230:9091/
+ </VirtualHost>
+
+
+
+
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/elog2labfolder/installation.rst~ Thu Jan 11 12:10:42 2018 +0100
@@ -0,0 +1,122 @@
+Installation of labfolder
+=========================
+
+Labfolder is easy to install. Follow the instructions given in the *labfolder Installation Manual*. The broad steps are: **install MySQL, docker and labolder; configure labfolder via the server.cnf file**. This labfolder config file could look like this::
+
+ # Network settings
+ DEFAULT_HTTP_PROTOCOL=https://
+ DEFAULT_DOMAIN=labfolder.rz-berlin.mpg.de
+
+ # JDBC Properties
+ JDBC_SERVER_TIMEZONE=Europe/Berlin
+ JDBC_DATABASE_URL=jdbc:mysql://localhost:3306/labfolder?useUnicode=true&characterEncoding=UTF-8
+ JDBC_USERNAME=labfolder
+ JDBC_PASSWORD=fhilab
+ JDBC_SCHEMA_NAME=labfolder
+ #REMOVE_ABANDONED_TIMEOUT=60
+
+ # Mail client properties
+ MAIL_STARTTLS=false
+ MAIL_AUTHENTICATION_ENABLE=false
+ MAIL_HOST=mail.fhi-berlin.mpg.de
+ MAIL_PORT=25
+ #MAIL_USERNAME=
+ #MAIL_PASSWORD=
+ MAIL_EMAIL=ppb@fhi-berlin.mpg.de
+
+ # Server Event logging
+ LOG_TO_FILE=true
+
+ #Maximum upload file size
+ FILEUPLOAD_MAXUPLOADSIZE=25000000
+
+ # User and group control
+ DEFAULT_GROUP_SIZE=50
+ DEFAULT_GROUP_TYPE_MAXI=true
+ DEFAULT_USER_STORAGE=3221225472
+ FEATURE_GLOBAL_PREVENT_DELETE_CONTENT=false
+
+ # Terms and Privacy links
+ TERMS_OF_USE_LINK=https://www.labfolder.com/terms-external-servers/
+ PRIVACY_LINK=https://www.labfolder.com/privacy-external-servers/
+
+ # LDAP Authentication
+ FEATURE_LDAP_AUTHENTICATION=true
+ LDAP_URL=ldap://ldap.rz-berlin.mpg.de:389
+ LDAP_BASE=ou=people,dc=ppb,dc=rz-berlin,dc=mpg,dc=de
+ #LDAP_SERVER_TYPE=
+ LDAP_USER_DN=cn=pwCheck,dc=rz-berlin,dc=mpg,dc=de
+ LDAP_PASSWORD=ProstetnikVogonJeltz
+ #LDAP_ANONYMOUS_READ_ONLY=
+ LDAP_USER_DN_PATTERNS=uid={0}
+ #LDAP_IS_TLS_ENABLED=
+ #LDAP_IS_ATTRIBUTE_SEARCH_ENABLED=
+ #LDAP_ATTRIBUTE_SEARCH_NAME=
+
+ # Usage monitoring
+ ACTIVE_USER_REPORT_USE_DEFAULT_MAIL_CLIENT=true
+ CUSTOMER_IDENTIFIER='Fritz-Haber-Institut'
+
+ # Mendeley
+ FEATURE_MENDELEY=false
+ #MENDELEY_CLIENT_ID=
+ #MENDELEY_CLIENT_SECRET=
+ #MENDELEY_CLIENT_CALLBACKURL=http://localhost:9091/eln/mendeley/oauthCallback
+
+ # Dropbox
+ FEATURE_DROPBOX=false
+ #DROPBOX_CONSUMER_KEY=
+ #DROPBOX_CONSUMER_SECRET=
+
+ # Figshare
+ FEATURE_FIGSHARE=false
+
+ # XHTML Export
+ FEATURE_XHTML_EXPORT=true
+ EXPORT_DOCUMENT_REPOSITORY_TYPE=fileSystem
+
+The configuration is explained in detail in the installation manual. Now, **create the labfolder database and run labfolder** (see the manual for details). Additionally, you could install Apache and set it up as a reverse proxy in order to make labfolder only available through https. The exact steps are::
+
+ labfolder@lf:~$ sudo apt-get install build-essential
+ labfolder@lf:~$ sudo apt install apache2
+ labfolder@lf:~$ sudo a2enmod proxy proxy_ajp proxy_http rewrite deflate headers proxy_balancer proxy_connect proxy_html xml2enc
+ labfolder@lf:~$ sudo a2enmod ssl
+
+ ### Use certificates from e.g. let's encrypt. Please see below for more information.
+
+ ### create /etc/apache2/sites-available/labfolder.conf with virtual hosts for http and https:
+ labfolder@lf:~$ sudo a2ensite labfolder.conf
+ labfolder@lf:~$ sudo a2dissite 000-default.conf
+ labfolder@lf:~$ sudo service apache2 restart
+
+To get SSL certificates from letsencrypt is quite straight forward. For example this guide shows how to set up SSL certificates:
+
+| https://www.digitalocean.com/community/tutorials/how-to-secure-apache-with-let-s-encrypt-on-ubuntu-16-04
+
+The Apache labfolder config file could look like this::
+
+ <VirtualHost *:80>
+ ErrorLog /var/log/apache2/error.log
+ LogLevel warn
+
+ ServerName labfolder.rz-berlin.mpg.de
+ Redirect / https://labfolder.rz-berlin.mpg.de/
+ </VirtualHost>
+
+ <VirtualHost *:443>
+ ErrorLog /var/log/apache2/error.log
+ LogLevel warn
+
+ ServerName labfolder.rz-berlin.mpg.de
+
+ SSLEngine On
+ SSLCertificateFile /etc/letsencrypt/live/labfolder.rz-berlin.mpg.de/fullchain.pem
+ SSLCertificateKeyFile /etc/letsencrypt/live/labfolder.rz-berlin.mpg.de/privkey.pem
+
+ ProxyPass / http://141.14.138.230:9091/
+ ProxyPassReverse / http://141.14.138.230:9091/
+ </VirtualHost>
+
+
+
+
